CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSMMUG00000007695
(
Macaca mulatta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMMUG00000007695
T38860_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA1
M312_0.6
Homo sapiens
Sequence logo not available
UAGGGW
RIP-chip
Cook et al.(2011)
560_17925491
0.915
HNRNPA1
M271_0.6
Homo sapiens
UAGGGW
SELEX
Cook et al.(2011)
23_7510636
0.915
HNRNPA1
M022_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00022
0.915
HNRNPA1L2
M023_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00023
0.894
HNRNPA2B1
M024_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00024
0.759
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMMUP00000010110
RRM
16
81
LFIGGLSFETTDESLRSNFELTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVE
ENSMMUP00000010110
RRM
103
172
IFVGGIKEDTEEYHLRDYFEEYGKIEVIEIMTDQGSGKQRGFAFVTFEDHDSVDKIVIQKYHTVNGHNCE
Links
Other
RRM
family RBPs
Other
Macaca mulatta
RBPs
280 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AFLA_046450
Aspergillus flavus
CADAFLAG00005972
N
0.000
AFUA_2G08570
Aspergillus fumigatus
CADAFUAG00004718
N
0.000
AMAG_02834
Allomyces macrogynus
AMAG_02834
N
0.000
amel4_ncbi_hmm3188
Apis mellifera
amel4_ncbi_hmm3188
N
0.000
An12g03930
Aspergillus niger
CADANGAG00009835
N
0.000
BC1G_04395
Botrytis cinerea
BC1G_04395
N
0.000
BDBG_08091
Blastomyces dermatitidis
BDBG_08091
N
0.000
cbc2
Schizosaccharomyces pombe
SPBC13A2.01c
N
0.000
CIMG_00837
Coccidioides immitis
CIMG_00837
N
0.000
CPSG_08054
Coccidioides posadasii
CPSG_08054
N
0.000
EAT82863.2
Phaeosphaeria nodorum
EAT82863.2
N
0.000
EFA74823.1
Polysphondylium pallidum
EFA74823.1
N
0.000
estExt_fgenesh1_kg.C_sca_10_chr8_2_00014
Nectria haematococca
estExt_fgenesh1_kg.C_sca_10_chr8_2_00014
N
0.000
estExt_fgenesh1_pm.C_20437
Schizophyllum commune
estExt_fgenesh1_pm.C_20437
N
0.000
estExt_fgenesh2_kg.C_120041
Serpula lacrymans
estExt_fgenesh2_kg.C_120041
N
0.000
estExt_fgenesh2_kg.C_20664
Agaricus bisporus
estExt_fgenesh2_kg.C_20664
N
0.000
estExt_Genewise1.C_10147
Cochliobolus heterostrophus C5
estExt_Genewise1.C_10147
N
0.000
estExt_Genewise1Plus.C_150343
Trichoderma atroviride
estExt_Genewise1Plus.C_150343
N
0.000
estExt_Genewise1Plus.C_40730
Myceliophthora thermophila
estExt_Genewise1Plus.C_40730
N
0.000
estExt_Genewise1Plus.C_50921
Neurospora discreta
estExt_Genewise1Plus.C_50921
N
0.000
estExt_Genewise1_worm.C_60324
Laccaria bicolor
estExt_Genewise1_worm.C_60324
N
0.000
e_gw1.10.746.1
Trichoderma virens
e_gw1.10.746.1
N
0.000
e_gw1.121.83.1
Postia placenta
e_gw1.121.83.1
N
0.000
e_gw1.17.191.1
Trichoderma reesei
e_gw1.17.191.1
N
0.000
e_gw1.18.125.1
Batrachochytrium dendrobatidis
e_gw1.18.125.1
N
0.000
e_gw1.3.1174.1
Thielavia terrestris
e_gw1.3.1174.1
N
0.000
fgenesh1_pg.C_scaffold_1000747
Cryphonectria parasitica
fgenesh1_pg.C_scaffold_1000747
N
0.000
fgenesh1_pm.00772_#_82
Aspergillus carbonarius
fgenesh1_pm.00772_#_82
N
0.000
fgeneshMC_pm.5_#_40
Mucor circinelloides
fgeneshMC_pm.5_#_40
N
0.000
FGSG_05488
Fusarium graminearum
FGSG_05488
N
0.000
FVEG_07036
Fusarium verticillioides
FVEG_07036
N
0.000
GID1.0044779
Dictyostelium purpureum
GID1.0044779
N
0.000
GLRG_00177
Colletotrichum graminicola
GLRG_00177
N
0.000
GSTUMT00010626001
Tuber melanosporum
GSTUMT00010626001
N
0.000
gw1.1.1171.1
Sporobolomyces roseus
gw1.1.1171.1
N
0.000
gw1.1.2136.1
Pleurotus ostreatus
gw1.1.2136.1
N
0.000
gw1.29.143.1
Phycomyces blakesleeanus
gw1.29.143.1
N
0.000
gwh2.1.1054.1
Phanerochaete chrysosporium
gwh2.1.1054.1
N
0.000
HCAG_07341
Histoplasma capsulatum
HCAG_07341
N
0.000
MCYG_04468
Microsporum canis
MCYG_04468
N
0.000
MGG_06296
Magnaporthe oryzae
MGG_06296
N
0.000
MGYG_02166
Microsporum gypseum
MGYG_02166
N
0.000
nasonia_NCBI_hmm1532803
Nasonia vitripennis
nasonia_NCBI_hmm1532803
N
0.000
NCBP2
Vicugna pacos
ENSVPAG00000010369
N
0.000
ncbp2
Dictyostelium discoideum
DDB_G0287197
N
0.000
NCU00210
Neurospora crassa
NCU00210
N
0.000
NFIA_084190
Neosartorya fischeri
CADNFIAG00008064
N
0.000
PABG_07236
Paracoccidioides brasiliensis
PABG_07236
N
0.000
Pa_7_2520
Podospora anserina
Pa_7_2520
N
0.000
Pc13g04070
Penicillium chrysogenum
Pc13g04070
N
0.000
PGTG_01720
Puccinia graminis
PGTG_01720
N
0.000
PHUM535920
Pediculus humanus
PHUM535920
N
0.000
PMAA_070830
Penicillium marneffei
PMAA_070830
N
0.000
PTRG_00402
Pyrenophora tritici repentis
PTRG_00402
N
0.000
SJAG_01064
Schizosaccharomyces japonicus
SJAG_01064
N
0.000
SNOG_09598
Stagonospora nodorum
SNOG_09598
N
0.000
SOCG_01831
Schizosaccharomyces octosporus
SOCG_01831
N
0.000
SPOG_01217
Schizosaccharomyces cryophilus
SPOG_01217
N
0.000
SPPG_00516
Spizellomyces punctatus
SPPG_00516
N
0.000
SS1G_13629
Sclerotinia sclerotiorum
SS1G_13629
N
0.000
TEQG_01953
Trichophyton equinum
TEQG_01953
N
0.000
TERG_03424
Trichophyton rubrum
TERG_03424
N
0.000
TESG_01120
Trichophyton tonsurans
TESG_01120
N
0.000