AAH73435 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAH73435 T59534_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.925
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.900
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.900
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.900
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.835
pAbp
M130_0.6 		Drosophila melanogaster GAAAAHV RNAcompete
Ray et al.(2013)
RNCMPT00139 		0.707
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAH73435 RRM 13 83
AAH73435 RRM 101 169
AAH73435 RRM 193 261
AAH73435 RRM 296 364

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

176 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.706
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.702
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.734
AAEL010318 Aedes aegypti AAEL010318 I 0.760
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.853
Ame_R017927 Ailuropoda melanoleuca Ame_R017927 I 0.700
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.781
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.871
Aqu1.221418 Amphimedon queenslandica Aqu1.221418 N 0.708
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.903
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.903
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.828
AGAP011092 Anopheles gambiae AGAP011092 I 0.753
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.756
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.756
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.756
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.767
PABPC1L Bos taurus ENSBTAG00000016849 I 0.789
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.925
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.746
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.746
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.760
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.921
PABPC4L Callithrix jacchus ENSCJAG00000003241 I 0.742
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.900
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.871
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.781
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.900
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.925
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.731
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.760
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.932
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.724
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.717
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.760
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.760
pabpc1l Danio rerio ENSDARG00000002597 I 0.796
pabpc1a Danio rerio ENSDARG00000017219 I 0.878
pabpc4 Danio rerio ENSDARG00000059259 I 0.935
pabpc1b Danio rerio ENSDARG00000021140 I 0.861
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.736
GF12652 Drosophila ananassae FBgn0089688 I 0.717
GG21846 Drosophila erecta FBgn0114024 I 0.721
GH21052 Drosophila grimshawi FBgn0128514 I 0.725
pAbp Drosophila melanogaster FBgn0261619 D 0.717
GI18654 Drosophila mojavensis FBgn0141393 I 0.729
GL11548 Drosophila persimilis FBgn0149157 I 0.724
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.724
GM21847 Drosophila sechellia FBgn0176724 I 0.717
GD11341 Drosophila simulans FBgn0183090 I 0.717
GJ21671 Drosophila virilis FBgn0208790 I 0.728
GK19652 Drosophila willistoni FBgn0221650 I 0.728
GE11925 Drosophila yakuba FBgn0229707 I 0.724
LOC100054235 Equus caballus ENSECAG00000009396 I 0.925
LOC100056021 Equus caballus ENSECAG00000020699 I 0.781
LOC100070836 Equus caballus ENSECAG00000022681 I 0.781
PABPC5 Equus caballus ENSECAG00000003452 I 0.700
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.767
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.921
PABPC4 Gallus gallus ENSGALG00000003800 I 0.964
PABPC1L Gallus gallus ENSGALG00000004123 I 0.832
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.857
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.803
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.882
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.928
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.925
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.722
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.771
185682 Helobdella robusta 185682 I 0.728
PABPC1 Homo sapiens ENSG00000070756 D 0.900
PABPC4 Homo sapiens ENSG00000090621 D 0.925
PABPC3 Homo sapiens ENSG00000151846 D 0.835
ENSG00000250177 Homo sapiens ENSG00000250177 I 0.756
PABPC1L Homo sapiens ENSG00000101104 I 0.771
ISCW014211 Ixodes scapularis ISCW014211 I 0.761
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.724
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.739
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.925
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.778
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.900
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.853
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.900
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.774
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.928
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.789
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.835
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.735
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.885
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.774
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.925
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.796
ENSMODG00000012040 Monodelphis domestica ENSMODG00000012040 I 0.703
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.756
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.799
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.860
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.953
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.896
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.728
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.910
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.903
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.839
Gm10110 Mus musculus ENSMUSG00000062093 I 0.914
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.835
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.756
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.756
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.756
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.739
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.918
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.781
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.900
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.903
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.971
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.900
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.921
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.792
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.900
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.781
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.921
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.864
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.882
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.785
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.846
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.896
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.774
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.925
PHUM617090 Pediculus humanus PHUM617090 I 0.770
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.771
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.853
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.925
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.900
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.821
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.781
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.900
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.914
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.849
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.889
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.903
Pabpc4l Rattus norvegicus ENSRNOG00000029749 N 0.701
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.731
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.835
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.789
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.729
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.729
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.925
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.900
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.792
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.950
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.814
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.903
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.799
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.867
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.885
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.935
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.878
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.763
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.871
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.728
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.932
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.853
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.900
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.760
AAK29408 Xenopus laevis AAK29408 I 0.810
CAA40721 Xenopus laevis CAA40721 I 0.889
AAI08463 Xenopus laevis AAI08463 I 0.900
AAH80020 Xenopus laevis AAH80020 I 0.810
AAH72110 Xenopus laevis AAH72110 I 0.900
AAH71118 Xenopus laevis AAH71118 I 0.817
AAH52100 Xenopus laevis AAH52100 I 0.889
AAA60936 Xenopus laevis AAA60936 I 0.885
Q6IP09 Xenopus laevis Q6IP09 I 0.900
Q6GR16 Xenopus laevis Q6GR16 I 0.817
Q98SP8 Xenopus laevis Q98SP8 I 0.810
P20965 Xenopus laevis P20965 I 0.889
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.932
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.799
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.907