XM_001365232.1 (Monodelphis domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMODG00000017657 T39190_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.932
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.882
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.882
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.882
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.818
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000015083 RRM 13 83
ENSMODP00000015083 RRM 101 169
ENSMODP00000015083 RRM 193 261
ENSMODP00000015083 RRM 296 365
ENSMODP00000022014 RRM 13 83
ENSMODP00000022014 RRM 101 169
ENSMODP00000022014 RRM 193 261
ENSMODP00000022014 RRM 296 365

Links

Other RRM family RBPs
Other Monodelphis domestica RBPs

176 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC3 Homo sapiens ENSG00000151846 D 0.818
pAbp Drosophila melanogaster FBgn0261619 D 0.704
PABPC4 Homo sapiens ENSG00000090621 D 0.932
PABPC1 Homo sapiens ENSG00000070756 D 0.882
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.857
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.886
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.811
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.964
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.800
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.782
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.882
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.832
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.929
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.711
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.746
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.882
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.757
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.861
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.864
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.782
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.932
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.857
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.936
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.896
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.832
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.764
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.843
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.932
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.832
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.929
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.768
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.850
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.861
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.929
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.882
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.932
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.921
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.829
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.721
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.886
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.882
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.771
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.829
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.879
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.768
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.771
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.879
Q98SP8 Xenopus laevis Q98SP8 I 0.800
AAA60936 Xenopus laevis AAA60936 I 0.871
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.723
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.723
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.864
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.771
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.854
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.761
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.746
AAH52100 Xenopus laevis AAH52100 I 0.875
AAH71118 Xenopus laevis AAH71118 I 0.811
AAH72110 Xenopus laevis AAH72110 I 0.871
Q6IP09 Xenopus laevis Q6IP09 I 0.871
Q6GR16 Xenopus laevis Q6GR16 I 0.811
P20965 Xenopus laevis P20965 I 0.875
CAA40721 Xenopus laevis CAA40721 I 0.875
AAK29408 Xenopus laevis AAK29408 I 0.800
AAI08463 Xenopus laevis AAI08463 I 0.871
AAH80020 Xenopus laevis AAH80020 I 0.800
AAH73435 Xenopus laevis AAH73435 I 0.953
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.730
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.708
GM21847 Drosophila sechellia FBgn0176724 I 0.704
GL11548 Drosophila persimilis FBgn0149157 I 0.711
GI18654 Drosophila mojavensis FBgn0141393 I 0.716
GH21052 Drosophila grimshawi FBgn0128514 I 0.719
GG21846 Drosophila erecta FBgn0114024 I 0.708
GF12652 Drosophila ananassae FBgn0089688 I 0.704
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.711
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.786
GD11341 Drosophila simulans FBgn0183090 I 0.704
GJ21671 Drosophila virilis FBgn0208790 I 0.715
GK19652 Drosophila willistoni FBgn0221650 I 0.715
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.725
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.746
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.722
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.723
185682 Helobdella robusta 185682 I 0.722
PHUM617090 Pediculus humanus PHUM617090 I 0.764
ISCW014211 Ixodes scapularis ISCW014211 I 0.761
GE11925 Drosophila yakuba FBgn0229707 I 0.711
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.885
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.882
ENSG00000250177 Homo sapiens ENSG00000250177 I 0.750
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.718
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.750
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.939
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.850
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.754
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.882
PABPC4L Callithrix jacchus ENSCJAG00000003241 I 0.736
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.929
pabpc1l Danio rerio ENSDARG00000002597 I 0.786
pabpc1a Danio rerio ENSDARG00000017219 I 0.861
pabpc1b Danio rerio ENSDARG00000021140 I 0.847
Bm1_16080 Brugia malayi Bm1_16080 I 0.702
PABPC1L Homo sapiens ENSG00000101104 I 0.764
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.757
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.929
LOC100070836 Equus caballus ENSECAG00000022681 I 0.771
LOC100056021 Equus caballus ENSECAG00000020699 I 0.768
LOC100054235 Equus caballus ENSECAG00000009396 I 0.936
pabpc4 Danio rerio ENSDARG00000059259 I 0.943
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.725
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.771
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.936
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.746
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.707
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.735
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.703
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.750
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.750
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.750
LOAG_01058 Loa loa LOAG_01058 I 0.702
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.746
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.746
AAEL010318 Aedes aegypti AAEL010318 I 0.750
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.882
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.936
PABPC1L Bos taurus ENSBTAG00000016849 I 0.782
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.886
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.818
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.918
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.754
AGAP011092 Anopheles gambiae AGAP011092 I 0.750
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.754
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.793
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.925
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.854
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.793
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.743
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.789
ENSMODG00000012040 Monodelphis domestica ENSMODG00000012040 I 0.700
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.879
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.886
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.829
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.825
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.882
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.882
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.782
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.932
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.975
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.886
Gm10110 Mus musculus ENSMUSG00000062093 I 0.929
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.718
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.836
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.882
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.936
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.709
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.764
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.932
PABPC1L Gallus gallus ENSGALG00000004123 I 0.836
PABPC4 Gallus gallus ENSGALG00000003800 I 0.982
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.932
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.832
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.857
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.771
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.882
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.768
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.936
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.893
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.725
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.768
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.936
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.839
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.779
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.789
ENSMODG00000018051 Monodelphis domestica ENSMODG00000018051 N 0.717