BGIOSIBCE010884 (Oryza indica)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 BGIOSIBCE010884 T61941_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BGIOSIBCE010884 YTH 343 433

Links

Other YTH family RBPs
Other Oryza indica RBPs

173 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.725
mgf001716m Mimulus guttatus mgf001716m N 0.714
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.703
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.736
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.835
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.736
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.802
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.802
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.758
mgf009938m Mimulus guttatus mgf009938m N 0.714
mgf013853m Mimulus guttatus mgf013853m N 0.714
mgf013935m Mimulus guttatus mgf013935m N 0.714
GRMZM2G056573 Zea mays GRMZM2G056573 N 0.725
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.747
mgf019846m Mimulus guttatus mgf019846m N 0.703
mgf019821m Mimulus guttatus mgf019821m N 0.725
mgf017987m Mimulus guttatus mgf017987m N 0.813
mgf015583m Mimulus guttatus mgf015583m N 0.824
mgf014829m Mimulus guttatus mgf014829m N 0.714
mgf014143m Mimulus guttatus mgf014143m N 0.824
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.736
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.813
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.758
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.714
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.714
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.714
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.714
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.714
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.714
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.714
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.714
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.714
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.714
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.714
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.758
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.714
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.857
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.747
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.857
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.857
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.714
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.714
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.714
ppa018635m Prunus persica ppa018635m N 0.835
MDP0000552419 Malus x domestica MDP0000552419 N 0.747
MDP0000488588 Malus x domestica MDP0000488588 N 0.725
MDP0000488248 Malus x domestica MDP0000488248 N 0.703
MDP0000405927 Malus x domestica MDP0000405927 N 0.758
MDP0000306387 Malus x domestica MDP0000306387 N 0.802
MDP0000287088 Malus x domestica MDP0000287088 N 0.758
MDP0000286471 Malus x domestica MDP0000286471 N 0.758
MDP0000256033 Malus x domestica MDP0000256033 N 0.725
MDP0000617859 Malus x domestica MDP0000617859 N 0.758
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.736
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.857
ppa003664m Prunus persica ppa003664m N 0.769
ppa003557m Prunus persica ppa003557m N 0.703
ppa002677m Prunus persica ppa002677m N 0.725
ppa002588m Prunus persica ppa002588m N 0.769
ppa002483m Prunus persica ppa002483m N 0.769
PDK_20s1906441g001 Phoenix dactylifera PDK_20s1906441g001 N 0.758
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.747
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.703
MDP0000248088 Malus x domestica MDP0000248088 N 0.747
MDP0000231231 Malus x domestica MDP0000231231 N 0.758
MDP0000199885 Malus x domestica MDP0000199885 N 0.758
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.747
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.813
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.714
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.736
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.780
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.714
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.780
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.703
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.758
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.835
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.758
MDP0000189157 Malus x domestica MDP0000189157 N 0.714
MDP0000171737 Malus x domestica MDP0000171737 N 0.747
MDP0000132385 Malus x domestica MDP0000132385 N 0.802
MDP0000124048 Malus x domestica MDP0000124048 N 0.725
LjT10H22.120.nd Lotus japonicus LjT10H22.120.nd N 0.747
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.725
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.769
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.835
GRMZM2G098174 Zea mays GRMZM2G098174 N 0.703
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.714
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.736
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.868
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.714
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.703
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.769
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.725
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.813
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.747
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.714
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.725
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.714
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.736
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.703
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.758
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.714
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 1.000
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.780
LOC_Os01g22630 Oryza sativa LOC_Os01g22630 N 0.758
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.747
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.736
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.780
BRADI2G12380 Brachypodium distachyon BRADI2G12380 N 0.769
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.714
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.725
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.813
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.802
PK26094.1 Cannabis sativa PK26094.1 N 0.714
PK23104.1 Cannabis sativa PK23104.1 N 0.758
PK17832.1 Cannabis sativa PK17832.1 N 0.780
PK05579.1 Cannabis sativa PK05579.1 N 0.769
PK02315.1 Cannabis sativa PK02315.1 N 0.824
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.703
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.769
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.802
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.934
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.703
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.758
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.736
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.703
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.714
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.780
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.703
PK01736.1 Cannabis sativa PK01736.1 N 0.714
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.714
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.725
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.725
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.703
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.703
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.703
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.703
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.747
29955.m001158 Ricinus communis 29955.m001158 N 0.747
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.725
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.725
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.769
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.714
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.758
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.758
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.758
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.714
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.714
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.714
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.769
29929.m004643 Ricinus communis 29929.m004643 N 0.758
29890.m000285 Ricinus communis 29890.m000285 N 0.725
29889.m003364 Ricinus communis 29889.m003364 N 0.824
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.747
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.736
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.824
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.835
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.758
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.736
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.725
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.758
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.725
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.703
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.736
29765.m000746 Ricinus communis 29765.m000746 N 0.714
SB09G004590 Sorghum bicolor Sb09g004590 N 0.725
SB07G024500 Sorghum bicolor Sb07g024500 N 0.747
SB07G006330 Sorghum bicolor Sb07g006330 N 0.725
SB07G000670 Sorghum bicolor Sb07g000670 N 0.703
SB06G027960 Sorghum bicolor Sb06g027960 N 0.714
SB03G031190 Sorghum bicolor Sb03g031190 N 0.780
SB02G003990 Sorghum bicolor Sb02g003990 N 0.725
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.758