CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
cassava35659.valid.m1
(
Manihot esculenta
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
cassava35659.valid.m1
T62332_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava35659.valid.m1
YTH
465
555
LFFSVNTSGQFVGLAEMVGPVDFHKNVEYWQQDKWTGCFPLKWHIVKDIPNSLLKHITLENNENKPVTNSRDTQEVKLEQGLKMFKIFKDH
Links
Other
YTH
family RBPs
Other
Manihot esculenta
RBPs
168 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CG17838
Drosophila melanogaster
FBgn0038826
D
0.000
amel4_ncbi_hmm4283
Apis mellifera
amel4_ncbi_hmm4283
I
0.000
GA27045-RA
Drosophila pseudoobscura
FBgn0248416
I
0.000
GE25686
Drosophila yakuba
FBgn0242747
I
0.000
GK22469
Drosophila willistoni
FBgn0224446
I
0.000
GJ22950
Drosophila virilis
FBgn0210053
I
0.000
GM23135
Drosophila sechellia
FBgn0178003
I
0.000
GI10594
Drosophila mojavensis
FBgn0133358
I
0.000
GH17270
Drosophila grimshawi
FBgn0124740
I
0.000
GG24121
Drosophila erecta
FBgn0116260
I
0.000
GF16693
Drosophila ananassae
FBgn0093714
I
0.000
AGAP001419
Anopheles gambiae
AGAP001419
I
0.000
AAEL002879
Aedes aegypti
AAEL002879
I
0.000
nasonia_NCBI_hmm256414
Nasonia vitripennis
nasonia_NCBI_hmm256414
I
0.000
PHUM268060
Pediculus humanus
PHUM268060
I
0.000