CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Medtr4g163280
(
Medicago truncatula
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
Medtr4g163280
T62454_0.6
PlantGDB (2010-Oct-15)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Medtr4g163280.1
YTH
445
535
LFFSVNASAQFCGVAEMVGPVNFDKSVDFWQQDKWSGQFPVKWHIIKDVPNSQFRHIVLENNDNKPVTNSRDTQEVKLQQGIEMLTIFKNY
Medtr4g163280.2
YTH
1
75
MVGPVNFDKSVDFWQQDKWSGQFPVKWHIIKDVPNSQFRHIVLENNDNKPVTNSRDTQEVKLQQGIEMLTIFKNY
Links
Other
YTH
family RBPs
Other
Medicago truncatula
RBPs
175 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
KHSRP
Homo sapiens
ENSG00000088247
D
0.000
KHSRP
Pteropus vampyrus
ENSPVAG00000007251
I
0.000
KHSRP
Pan troglodytes
ENSPTRG00000010364
I
0.000
ENSPPYG00000019172
Pongo pygmaeus
ENSPPYG00000019172
I
0.000
ENSPPYG00000009454
Pongo pygmaeus
ENSPPYG00000009454
I
0.000
KHSRP
Procavia capensis
ENSPCAG00000000246
I
0.000
KHSRP
Oryzias latipes
ENSORLG00000011882
I
0.000
KHSRP
Ochotona princeps
ENSOPRG00000010594
I
0.000
KHSRP
Ornithorhynchus anatinus
ENSOANG00000000261
I
0.000
KHSRP
Anolis carolinensis
ENSACAG00000015398
I
0.000
KHSRP
Sus scrofa
ENSSSCG00000013538
I
0.000
AAI69923
Xenopus laevis
AAI69923
I
0.000
AAI61696
Xenopus laevis
AAI61696
I
0.000
Ame_R016412
Ailuropoda melanoleuca
Ame_R016412
I
0.000
khsrp
Xenopus tropicalis
ENSXETG00000021862
I
0.000
KHSRP
Tursiops truncatus
ENSTTRG00000010390
I
0.000
KHSRP
Takifugu rubripes
ENSTRUG00000010395
I
0.000
KHSRP
Tetraodon nigroviridis
ENSTNIG00000014067
I
0.000
KHSRP
Spermophilus tridecemlineatus
ENSSTOG00000002371
I
0.000
Khsrp
Mus musculus
ENSMUSG00000007670
I
0.000
KHSRP
Monodelphis domestica
ENSMODG00000001952
I
0.000
LOC505564
Bos taurus
ENSBTAG00000021018
I
0.000
KHSRP
Canis familiaris
ENSCAFG00000018667
I
0.000
KHSRP
Callithrix jacchus
ENSCJAG00000016627
I
0.000
KHSRP
Cavia porcellus
ENSCPOG00000005140
I
0.000
KHSRP
Danio rerio
ENSDARG00000026489
I
0.000
Khsrp
Dipodomys ordii
ENSDORG00000002447
I
0.000
LOC100065608
Equus caballus
ENSECAG00000018305
I
0.000
KHSRP
Echinops telfairi
ENSETEG00000004793
I
0.000
KHSRP
Felis catus
ENSFCAG00000003731
I
0.000
KHSRP
Gasterosteus aculeatus
ENSGACG00000012422
I
0.000
KHSRP
Gasterosteus aculeatus
ENSGACG00000018990
I
0.000
KHSRP
Gorilla gorilla
ENSGGOG00000007028
I
0.000
KHSRP
Loxodonta africana
ENSLAFG00000002426
I
0.000
KHSRP
Macropus eugenii
ENSMEUG00000016601
I
0.000
KHSRP
Microcebus murinus
ENSMICG00000007863
I
0.000
KHSRP
Myotis lucifugus
ENSMLUG00000015543
I
0.000
KHSRP
Macaca mulatta
ENSMMUG00000005597
I
0.000
AAN77160
Xenopus laevis
AAN77160
I
0.000