cassava35661.valid.m1 (Manihot esculenta)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 cassava35661.valid.m1 T62334_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava35661.valid.m1 YTH 487 577

Links

Other YTH family RBPs
Other Manihot esculenta RBPs

168 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R013855 Ailuropoda melanoleuca Ame_R013855 N 0.000
PNO1 Anolis carolinensis ENSACAG00000001218 N 0.000
XM_002882767.1 Arabidopsis lyrata scaffold_301521.1 N 0.000
AT3G13230 Arabidopsis thaliana AT3G13230-TAIR-G N 0.000
ARB_00984 Arthroderma benhamiae ARB_00984 N 0.000
PNO1 Ashbya gossypii PNO1 N 0.000
BDBG_01721 Blastomyces dermatitidis BDBG_01721 N 0.000
PNO1_BOVIN Bos taurus ENSBTAG00000010604 N 0.000
BC1G_12211 Botrytis cinerea BC1G_12211 N 0.000
LOC100389955 Callithrix jacchus ENSCJAG00000006564 N 0.000
orf19.7618 Candida albicans orf19.7618 N 0.000
Cd36_35296 Candida dubliniensis Cd36_35296 N 0.000
CAGL0K09460g Candida glabrata CAGL0K09460g N 0.000
PGUG_02960 Candida guilliermondii PGUG_02960 N 0.000
CLUG_01545 Candida lusitaniae CLUG_01545 N 0.000
CPAG_01545 Candida parapsilosis CPAG_01545 N 0.000
CTRG_05813 Candida tropicalis CTRG_05813 N 0.000
PNO1 Canis familiaris ENSCAFG00000003256 N 0.000
PNO1 Cavia porcellus ENSCPOG00000010130 N 0.000
CIMG_07268 Coccidioides immitis CIMG_07268 N 0.000
CPSG_08784 Coccidioides posadasii CPSG_08784 N 0.000
estExt_fgenesh1_kg.C_140013 Cochliobolus heterostrophus C5 estExt_fgenesh1_kg.C_140013 N 0.000
GLRG_03940 Colletotrichum graminicola GLRG_03940 N 0.000
e_gw1.3.2749.1 Cryphonectria parasitica e_gw1.3.2749.1 N 0.000
pno1 Danio rerio ENSDARG00000008502 N 0.000
DEHA0G05258g Debaryomyces hansenii DEHA0G05258g N 0.000
Pno1 Dipodomys ordii ENSDORG00000006867 N 0.000
fgenesh_newKGs_pm.139__21 Emiliania huxleyi fgenesh_newKGs_pm.139__21 N 0.000
LOC100061904 Equus caballus ENSECAG00000011263 N 0.000
PNO1 Erinaceus europaeus ENSEEUG00000009611 N 0.000
FGSG_01345 Fusarium graminearum FGSG_01345 N 0.000
FOXG_00036 Fusarium oxysporum FOXG_00036 N 0.000
FVEG_01480 Fusarium verticillioides FVEG_01480 N 0.000
PNO1_CHICK Gallus gallus ENSGALG00000009093 N 0.000
PNO1 Gasterosteus aculeatus ENSGACG00000012047 N 0.000
PNO1 Gorilla gorilla ENSGGOG00000009158 N 0.000
HCAG_04100 Histoplasma capsulatum HCAG_04100 N 0.000
PNO1 Homo sapiens ENSG00000115946 N 0.000
KLLA0C06446g Kluyveromyces lactis KLLA0C06446g N 0.000
KLTH0G02574g Kluyveromyces thermotolerans KLTH0G02574g N 0.000
Kwal_18864 Kluyveromyces waltii Kwal_18864 N 0.000
SAKL0G03740g Lachancea kluyveri SAKL0G03740g N 0.000
LELG_05249 Lodderomyces elongisporus LELG_05249 N 0.000
PNO1 Loxodonta africana ENSLAFG00000000046 N 0.000
XM_001095777.1 Macaca mulatta ENSMMUG00000030357 N 0.000
Q7YRC8_MACMU Macaca mulatta ENSMMUG00000017461 N 0.000
PNO1 Macropus eugenii ENSMEUG00000004504 N 0.000
MGG_05136 Magnaporthe oryzae MGG_05136 N 0.000
PNO1 Meleagris gallopavo ENSMGAG00000004514 N 0.000
PNO1 Microcebus murinus ENSMICG00000010897 N 0.000
MCYG_07269 Microsporum canis MCYG_07269 N 0.000
MGYG_04767 Microsporum gypseum MGYG_04767 N 0.000
PNO1 Monodelphis domestica ENSMODG00000003567 N 0.000
estExt_fgenesh1_pg.C_110137 Monosiga brevicollis estExt_fgenesh1_pg.C_110137 N 0.000
estExt_Genewise1Plus.C_10658 Mucor circinelloides estExt_Genewise1Plus.C_10658 N 0.000
Pno1 Mus musculus ENSMUSG00000020116 N 0.000
estExt_Genewise1Plus.C_10659 Myceliophthora thermophila estExt_Genewise1Plus.C_10659 N 0.000
e_gw1.3.1059.1 Mycosphaerella fijiensis e_gw1.3.1059.1 N 0.000
estExt_Genewise1Plus.C_chr_70397 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_70397 N 0.000
PNO1 Myotis lucifugus ENSMLUG00000010850 N 0.000
estExt_fgenesh1_pg.C_sca_1_chr1_3_00036 Nectria haematococca estExt_fgenesh1_pg.C_sca_1_chr1_3_00036 N 0.000
NCU07956 Neurospora crassa NCU07956 N 0.000
e_gw1.3.666.1 Neurospora discreta e_gw1.3.666.1 N 0.000
PNO1 Ochotona princeps ENSOPRG00000009643 N 0.000
PNO1 Ornithorhynchus anatinus ENSOANG00000008388 N 0.000
ENSOCUG00000022236 Oryctolagus cuniculus ENSOCUG00000022236 N 0.000
ENSOCUG00000006100 Oryctolagus cuniculus ENSOCUG00000006100 N 0.000
Q6VBQ6_ORYLA Oryzias latipes ENSORLG00000002371 N 0.000
PNO1 Pan troglodytes ENSPTRG00000011999 N 0.000
PABG_01374 Paracoccidioides brasiliensis PABG_01374 N 0.000
Pc14g01220 Penicillium chrysogenum Pc14g01220 N 0.000
PMAA_046470 Penicillium marneffei PMAA_046470 N 0.000
EAT88982.1 Phaeosphaeria nodorum EAT88982.1 N 0.000
estExt_Genewise1Plus.C_250095 Phycomyces blakesleeanus estExt_Genewise1Plus.C_250095 N 0.000
estExt_genewise1_human.C_chr_1.20929 Pichia stipitis estExt_genewise1_human.C_chr_1.20929 N 0.000
Pa_3_1680 Podospora anserina Pa_3_1680 N 0.000
ENSPPYG00000012353 Pongo pygmaeus ENSPPYG00000012353 N 0.000
PNO1 Procavia capensis ENSPCAG00000016146 N 0.000
PNO1 Pteropus vampyrus ENSPVAG00000012695 N 0.000
PTRG_02803 Pyrenophora tritici repentis PTRG_02803 N 0.000
Pno1 Rattus norvegicus ENSRNOG00000005524 N 0.000
RO3G_00885 Rhizopus oryzae RO3G_00885 N 0.000
RO3G_05288 Rhizopus oryzae RO3G_05288 N 0.000
23888_YOR145C Saccharomyces bayanus 23888_YOR145C N 0.000
Scas_Contig632.19 Saccharomyces castellii Scas_Contig632.19 N 0.000
PNO1 Saccharomyces cerevisiae YOR145C N 0.000
Skud_Contig1833.8 Saccharomyces kudriavzevii Skud_Contig1833.8 N 0.000
20359_YOR145C Saccharomyces mikatae 20359_YOR145C N 0.000
20872_YOR145C Saccharomyces paradoxus 20872_YOR145C N 0.000
PTSG_04415 Salpingoeca rosetta PTSG_04415 N 0.000
SS1G_04290 Sclerotinia sclerotiorum SS1G_04290 N 0.000
SNOG_03777 Stagonospora nodorum SNOG_03777 N 0.000
PNO1 Sus scrofa ENSSSCG00000008352 N 0.000
PNO1 Takifugu rubripes ENSTRUG00000012470 N 0.000
PNO1 Tetraodon nigroviridis ENSTNIG00000009825 N 0.000
estExt_Genewise1.C_10689 Thielavia terrestris estExt_Genewise1.C_10689 N 0.000
fgenesh1_pm.C_scaffold_14000035 Trichoderma atroviride fgenesh1_pm.C_scaffold_14000035 N 0.000
estExt_fgenesh5_pg.C_40050 Trichoderma reesei estExt_fgenesh5_pg.C_40050 N 0.000
estExt_Genewise1Plus.C_91132 Trichoderma virens estExt_Genewise1Plus.C_91132 N 0.000
TEQG_07954 Trichophyton equinum TEQG_07954 N 0.000
TERG_01665 Trichophyton rubrum TERG_01665 N 0.000
TESG_04215 Trichophyton tonsurans TESG_04215 N 0.000
TRV_03730 Trichophyton verrucosum TRV_03730 N 0.000
GSTUMT00003923001 Tuber melanosporum GSTUMT00003923001 N 0.000
PNO1 Tursiops truncatus ENSTTRG00000014002 N 0.000
UREG_07832 Uncinocarpus reesii UREG_07832 N 0.000
A7THL8_VANPO Vanderwaltozyma polyspora A7THL8_VANPO N 0.000
PNO1 Vicugna pacos ENSVPAG00000012083 N 0.000
AAQ24169 Xenopus laevis AAQ24169 N 0.000
AAH42279 Xenopus laevis AAH42279 N 0.000
Q8AVH4 Xenopus laevis Q8AVH4 N 0.000
pno1 Xenopus tropicalis ENSXETG00000017349 N 0.000
YALI0E01122g Yarrowia lipolytica YALI0E01122g N 0.000
ZYRO0D11440g Zygosaccharomyces rouxii ZYRO0D11440g N 0.000