CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Medtr4g163280
(
Medicago truncatula
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
Medtr4g163280
T62454_0.6
PlantGDB (2010-Oct-15)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Medtr4g163280.1
YTH
445
535
LFFSVNASAQFCGVAEMVGPVNFDKSVDFWQQDKWSGQFPVKWHIIKDVPNSQFRHIVLENNDNKPVTNSRDTQEVKLQQGIEMLTIFKNY
Medtr4g163280.2
YTH
1
75
MVGPVNFDKSVDFWQQDKWSGQFPVKWHIIKDVPNSQFRHIVLENNDNKPVTNSRDTQEVKLQQGIEMLTIFKNY
Links
Other
YTH
family RBPs
Other
Medicago truncatula
RBPs
175 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R016451
Ailuropoda melanoleuca
Ame_R016451
N
0.000
RBM14_BOVIN
Bos taurus
ENSBTAG00000001225
N
0.000
A6MLC8_CALJA
Callithrix jacchus
ENSCJAG00000001294
I
0.000
RBM14
Canis familiaris
ENSCAFG00000012405
N
0.000
RBM14
Cavia porcellus
ENSCPOG00000008019
N
0.000
RBM14
Dasypus novemcinctus
ENSDNOG00000010103
N
0.000
Rbm14
Dipodomys ordii
ENSDORG00000002474
N
0.000
RBM14
Gorilla gorilla
ENSGGOG00000009469
N
0.000
RBM4
Homo sapiens
ENSG00000239306
D
0.000
RBM14
Macaca mulatta
ENSMMUG00000007830
N
0.000
RBM14
Microcebus murinus
ENSMICG00000003814
N
0.000
Rbm14
Mus musculus
ENSMUSG00000006456
N
0.000
RBM14
Ochotona princeps
ENSOPRG00000009139
N
0.000
RBM14
Oryctolagus cuniculus
ENSOCUG00000022838
N
0.000
RBM14
Pan troglodytes
ENSPTRG00000003932
N
0.000
ENSPPYG00000003015
Pongo pygmaeus
ENSPPYG00000003015
N
0.000
RBM14
Procavia capensis
ENSPCAG00000003334
N
0.000
RBM14
Pteropus vampyrus
ENSPVAG00000010483
N
0.000
Rbm4
Rattus norvegicus
ENSRNOG00000019669
I
0.000
RBM14
Sorex araneus
ENSSARG00000006530
N
0.000
RBM14
Spermophilus tridecemlineatus
ENSSTOG00000009796
N
0.000
ENSSSCG00000012929
Sus scrofa
ENSSSCG00000012929
N
0.000
RBM14
Tupaia belangeri
ENSTBEG00000003641
N
0.000
RBM14
Tursiops truncatus
ENSTTRG00000011156
N
0.000