pabpc1 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000006635 T42845_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.964
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.964
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.964
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.903
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.867
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000014537 RRM 13 83
ENSXETP00000014537 RRM 101 169
ENSXETP00000014537 RRM 193 262
ENSXETP00000014537 RRM 296 364

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

178 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
185682 Helobdella robusta 185682 I 0.731
69344 Helobdella robusta 69344 I 0.703
AAA60936 Xenopus laevis AAA60936 I 0.964
AAEL010318 Aedes aegypti AAEL010318 I 0.749
AAH52100 Xenopus laevis AAH52100 I 0.968
AAH71118 Xenopus laevis AAH71118 I 0.835
AAH72110 Xenopus laevis AAH72110 I 0.968
AAH73435 Xenopus laevis AAH73435 I 0.907
AAH80020 Xenopus laevis AAH80020 I 0.835
AAI08463 Xenopus laevis AAI08463 I 0.968
AAK29408 Xenopus laevis AAK29408 I 0.835
AGAP011092 Anopheles gambiae AGAP011092 I 0.746
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.777
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.777
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.777
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.935
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.803
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.796
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.743
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.770
CAA40721 Xenopus laevis CAA40721 I 0.968
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.753
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.753
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.707
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.742
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.721
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.835
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.853
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.968
PABPC1L Bos taurus ENSBTAG00000016849 I 0.799
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.864
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.964
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.864
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.792
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.742
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.867
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.964
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.767
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.935
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.867
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.767
ENSCSAVG00000003102 Ciona savignyi ENSCSAVG00000003102 I 0.710
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.735
pabpc1l Danio rerio ENSDARG00000002597 I 0.810
pabpc1a Danio rerio ENSDARG00000017219 I 0.943
pabpc1b Danio rerio ENSDARG00000021140 I 0.925
pabpc4 Danio rerio ENSDARG00000059259 I 0.867
LOC100054235 Equus caballus ENSECAG00000009396 I 0.864
LOC100056021 Equus caballus ENSECAG00000020699 I 0.842
LOC100070836 Equus caballus ENSECAG00000022681 I 0.785
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.864
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.778
PABPC1 Homo sapiens ENSG00000070756 D 0.964
PABPC4 Homo sapiens ENSG00000090621 D 0.867
PABPC1L Homo sapiens ENSG00000101104 I 0.778
PABPC3 Homo sapiens ENSG00000151846 D 0.903
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.846
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.939
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.918
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.857
PABPC4 Gallus gallus ENSGALG00000003800 I 0.892
PABPC1L Gallus gallus ENSGALG00000004123 I 0.860
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.867
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.778
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.785
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.864
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.792
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.964
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.799
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.860
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.864
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.781
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.789
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.828
ENSMLUG00000012245 Myotis lucifugus ENSMLUG00000012245 I 0.753
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.864
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.781
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.964
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.914
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.961
ENSMODG00000012040 Monodelphis domestica ENSMODG00000012040 I 0.763
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.842
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.770
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.817
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.921
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.879
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.860
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.968
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.900
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.885
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.749
Gm10110 Mus musculus ENSMUSG00000062093 I 0.864
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.968
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.892
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.860
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.792
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.964
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.964
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.728
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.964
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.781
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.860
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.946
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.900
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.802
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.860
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.774
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.867
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.914
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.778
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.964
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.867
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.781
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.961
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.903
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.792
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.964
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.968
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.746
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.885
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.864
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.903
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.842
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.864
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.964
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.796
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.713
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.735
ENSTBEG00000009320 Tupaia belangeri ENSTBEG00000009320 I 0.701
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.889
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.832
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.968
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.928
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.905
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.864
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.767
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.925
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.867
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.835
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.943
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.943
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.774
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.964
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.767
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.842
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.824
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.753
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.724
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.749
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.739
e_gw1.7.538.1 Trichoplax adhaerens e_gw1.7.538.1 I 0.701
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.715
GF12652 Drosophila ananassae FBgn0089688 I 0.711
GG21846 Drosophila erecta FBgn0114024 I 0.708
GH21052 Drosophila grimshawi FBgn0128514 I 0.729
GI18654 Drosophila mojavensis FBgn0141393 I 0.729
GL11548 Drosophila persimilis FBgn0149157 I 0.715
GM21847 Drosophila sechellia FBgn0176724 I 0.704
GD11341 Drosophila simulans FBgn0183090 I 0.704
GJ21671 Drosophila virilis FBgn0208790 I 0.722
GK19652 Drosophila willistoni FBgn0221650 I 0.715
GE11925 Drosophila yakuba FBgn0229707 I 0.711
pAbp Drosophila melanogaster FBgn0261619 D 0.704
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.732
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.749
ISCW014211 Ixodes scapularis ISCW014211 I 0.761
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.763
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.763
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.763
P20965 Xenopus laevis P20965 I 0.968
PHUM617090 Pediculus humanus PHUM617090 I 0.774
Q6GR16 Xenopus laevis Q6GR16 I 0.835
Q6IP09 Xenopus laevis Q6IP09 I 0.968
Q98SP8 Xenopus laevis Q98SP8 I 0.835
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.736
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.715
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.715
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.736