PABPC4 (Cavia porcellus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCPOG00000009552 T35816_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.989
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.885
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.885
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.885
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.821
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000008574 RRM 13 83
ENSCPOP00000008574 RRM 101 169
ENSCPOP00000008574 RRM 193 262
ENSCPOP00000008574 RRM 296 364

Links

Other RRM family RBPs
Other Cavia porcellus RBPs

178 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC3 Homo sapiens ENSG00000151846 D 0.821
PABPC4 Homo sapiens ENSG00000090621 D 0.989
PABPC1 Homo sapiens ENSG00000070756 D 0.885
pAbp Drosophila melanogaster FBgn0261619 D 0.701
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.914
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.825
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.849
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.889
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.803
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.935
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.842
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.710
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.867
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.728
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.763
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.885
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.778
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.864
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.857
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.799
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.921
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.849
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.803
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.885
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.993
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.885
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.785
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.846
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.989
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.885
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.918
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.792
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.849
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.857
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.989
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.789
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.882
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.953
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.832
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.978
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.832
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.738
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.889
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.885
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.785
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.832
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.982
Q98SP8 Xenopus laevis Q98SP8 I 0.810
AAA60936 Xenopus laevis AAA60936 I 0.853
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.736
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.736
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.918
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.792
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.857
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.770
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.753
AAH52100 Xenopus laevis AAH52100 I 0.857
AAH71118 Xenopus laevis AAH71118 I 0.814
AAH72110 Xenopus laevis AAH72110 I 0.871
Q6IP09 Xenopus laevis Q6IP09 I 0.871
Q6GR16 Xenopus laevis Q6GR16 I 0.814
P20965 Xenopus laevis P20965 I 0.857
CAA40721 Xenopus laevis CAA40721 I 0.857
AAK29408 Xenopus laevis AAK29408 I 0.810
AAI08463 Xenopus laevis AAI08463 I 0.871
AAH80020 Xenopus laevis AAH80020 I 0.810
AAH73435 Xenopus laevis AAH73435 I 0.932
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.722
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.714
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.742
GL11548 Drosophila persimilis FBgn0149157 I 0.715
GI18654 Drosophila mojavensis FBgn0141393 I 0.722
GH21052 Drosophila grimshawi FBgn0128514 I 0.725
GG21846 Drosophila erecta FBgn0114024 I 0.704
GF12652 Drosophila ananassae FBgn0089688 I 0.701
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.715
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.792
GD11341 Drosophila simulans FBgn0183090 I 0.701
GM21847 Drosophila sechellia FBgn0176724 I 0.701
GJ21671 Drosophila virilis FBgn0208790 I 0.725
GK19652 Drosophila willistoni FBgn0221650 I 0.718
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.753
e_gw1.7.538.1 Trichoplax adhaerens e_gw1.7.538.1 I 0.708
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.728
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.732
185682 Helobdella robusta 185682 I 0.714
PHUM617090 Pediculus humanus PHUM617090 I 0.774
ISCW014211 Ixodes scapularis ISCW014211 I 0.757
GE11925 Drosophila yakuba FBgn0229707 I 0.708
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.864
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.792
PABPC1L Homo sapiens ENSG00000101104 I 0.785
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.760
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.857
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.774
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.885
PABPC4L Callithrix jacchus ENSCJAG00000003241 I 0.721
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.986
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.731
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.789
ENSCSAVG00000003102 Ciona savignyi ENSCSAVG00000003102 I 0.707
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.731
pabpc1l Danio rerio ENSDARG00000002597 I 0.796
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.781
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.971
LOC100070836 Equus caballus ENSECAG00000022681 I 0.792
LOC100056021 Equus caballus ENSECAG00000020699 I 0.771
LOC100054235 Equus caballus ENSECAG00000009396 I 0.989
pabpc4 Danio rerio ENSDARG00000059259 I 0.925
pabpc1b Danio rerio ENSDARG00000021140 I 0.843
pabpc1a Danio rerio ENSDARG00000017219 I 0.853
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.989
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.885
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.993
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.739
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.707
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.753
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.753
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.753
LOAG_01058 Loa loa LOAG_01058 I 0.711
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.760
Bm1_16080 Brugia malayi Bm1_16080 I 0.711
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.707
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.753
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.753
PABPC1L Bos taurus ENSBTAG00000016849 I 0.799
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.889
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.824
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.878
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.760
AGAP011092 Anopheles gambiae AGAP011092 I 0.753
AAEL010318 Aedes aegypti AAEL010318 I 0.760
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.753
Bm1_06880 Brugia malayi Bm1_06880 I 0.708
ENSG00000250177 Homo sapiens ENSG00000250177 I 0.735
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.885
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.889
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.975
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.939
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.846
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.806
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.739
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.799
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.882
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.828
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.832
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.742
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.839
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.885
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.885
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.799
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.986
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.935
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.889
Gm10110 Mus musculus ENSMUSG00000062093 I 0.978
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.839
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.885
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.789
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.711
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.785
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.989
PABPC1L Gallus gallus ENSGALG00000004123 I 0.824
PABPC4 Gallus gallus ENSGALG00000003800 I 0.943
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.918
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.835
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.849
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.989
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.781
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.885
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.993
PABPC4 Myotis lucifugus ENSMLUG00000012068 I 0.749
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.943
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.738
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.789
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.989
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.828
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.796
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.803