XR_030308.1 (Monodelphis domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMODG00000006222 T39091_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.989
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.989
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.989
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.925
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.875
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000007717 RRM 13 83
ENSMODP00000007717 RRM 101 169
ENSMODP00000007717 RRM 193 262
ENSMODP00000007717 RRM 296 364
ENSMODP00000034483 RRM 36 105
ENSMODP00000034483 RRM 139 207

Links

Other RRM family RBPs
Other Monodelphis domestica RBPs

181 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC4 Homo sapiens ENSG00000090621 D 0.875
PABPC3 Homo sapiens ENSG00000151846 D 0.925
PABPC1 Homo sapiens ENSG00000070756 D 0.989
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.782
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.993
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.829
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.886
ENSTBEG00000009320 Tupaia belangeri ENSTBEG00000009320 I 0.722
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.753
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.721
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.796
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.989
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.925
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.909
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.768
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.989
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.968
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.943
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.850
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.868
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.921
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.781
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.864
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.879
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.854
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.786
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.939
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.875
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.789
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.864
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.810
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.918
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.946
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.871
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.989
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.875
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.789
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.921
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.875
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.904
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.746
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.993
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.989
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.793
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.929
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.986
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.789
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.961
Q98SP8 Xenopus laevis Q98SP8 I 0.839
AAA60936 Xenopus laevis AAA60936 I 0.936
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.736
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.725
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.725
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.736
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.811
Ame_R017106 Ailuropoda melanoleuca Ame_R017106 I 0.707
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.800
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.961
AAH52100 Xenopus laevis AAH52100 I 0.939
AAH71118 Xenopus laevis AAH71118 I 0.843
Q6IP09 Xenopus laevis Q6IP09 I 0.943
Q6GR16 Xenopus laevis Q6GR16 I 0.843
P20965 Xenopus laevis P20965 I 0.939
CAA40721 Xenopus laevis CAA40721 I 0.939
AAK29408 Xenopus laevis AAK29408 I 0.839
AAI08463 Xenopus laevis AAI08463 I 0.943
AAH80020 Xenopus laevis AAH80020 I 0.839
AAH73435 Xenopus laevis AAH73435 I 0.896
AAH72110 Xenopus laevis AAH72110 I 0.943
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.767
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.746
GK19652 Drosophila willistoni FBgn0221650 I 0.711
GJ21671 Drosophila virilis FBgn0208790 I 0.711
GL11548 Drosophila persimilis FBgn0149157 I 0.704
GI18654 Drosophila mojavensis FBgn0141393 I 0.718
GH21052 Drosophila grimshawi FBgn0128514 I 0.711
GF12652 Drosophila ananassae FBgn0089688 I 0.701
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.704
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.818
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.832
ISCW014211 Ixodes scapularis ISCW014211 I 0.754
PHUM617090 Pediculus humanus PHUM617090 I 0.760
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.732
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.724
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.763
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.746
e_gw1.7.538.1 Trichoplax adhaerens e_gw1.7.538.1 I 0.708
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.739
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.725
69344 Helobdella robusta 69344 I 0.710
185682 Helobdella robusta 185682 I 0.731
GE11925 Drosophila yakuba FBgn0229707 I 0.701
ENSG00000250177 Homo sapiens ENSG00000250177 I 0.703
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.735
ENSCSAVG00000003102 Ciona savignyi ENSCSAVG00000003102 I 0.710
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.779
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.882
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.957
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.775
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.989
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.875
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.739
pabpc1l Danio rerio ENSDARG00000002597 I 0.825
pabpc1a Danio rerio ENSDARG00000017219 I 0.943
PABPC1L Homo sapiens ENSG00000101104 I 0.786
Bm1_06880 Brugia malayi Bm1_06880 I 0.708
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.779
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.871
LOC100070836 Equus caballus ENSECAG00000022681 I 0.782
LOC100056021 Equus caballus ENSECAG00000020699 I 0.868
LOC100054235 Equus caballus ENSECAG00000009396 I 0.879
pabpc4 Danio rerio ENSDARG00000059259 I 0.875
pabpc1b Danio rerio ENSDARG00000021140 I 0.922
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.793
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.879
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.746
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.714
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.739
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.703
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.767
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.767
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.767
LOAG_01058 Loa loa LOAG_01058 I 0.708
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.753
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.746
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.746
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.989
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.879
PABPC1L Bos taurus ENSBTAG00000016849 I 0.804
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.993
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.854
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.832
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.753
AGAP011092 Anopheles gambiae AGAP011092 I 0.749
AAEL010318 Aedes aegypti AAEL010318 I 0.749
Bm1_16080 Brugia malayi Bm1_16080 I 0.708
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.989
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.993
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.868
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.879
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.936
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.825
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.763
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.857
ENSMODG00000012040 Monodelphis domestica ENSMODG00000012040 I 0.779
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.936
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.918
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.904
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.743
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.989
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.989
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.800
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.875
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.886
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.993
Gm10110 Mus musculus ENSMUSG00000062093 I 0.871
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.750
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.989
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.789
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.879
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.810
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.786
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.875
PABPC1L Gallus gallus ENSGALG00000004123 I 0.857
PABPC4 Gallus gallus ENSGALG00000003800 I 0.889
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.864
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.907
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.943
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.879
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.793
ENSMLUG00000012245 Myotis lucifugus ENSMLUG00000012245 I 0.771
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.843
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.800
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.786
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.879
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.861
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.800
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.989
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.850
ENSGALG00000014484 Gallus gallus ENSGALG00000014484 N 1.000
ENSETEG00000019213 Echinops telfairi ENSETEG00000019213 N 0.783