XR_030308.1 (Monodelphis domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMODG00000006222 T39091_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.989
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.989
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.989
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.925
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.875
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000007717 RRM 13 83
ENSMODP00000007717 RRM 101 169
ENSMODP00000007717 RRM 193 262
ENSMODP00000007717 RRM 296 364
ENSMODP00000034483 RRM 36 105
ENSMODP00000034483 RRM 139 207

Links

Other RRM family RBPs
Other Monodelphis domestica RBPs

181 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH43638 Xenopus laevis AAH43638 I 0.000
AAH73457 Xenopus laevis AAH73457 I 0.000
AAI31885 Xenopus laevis AAI31885 I 0.000
AAY79165 Xenopus laevis AAY79165 I 0.000
AAY79166 Xenopus laevis AAY79166 I 0.000
Ame_R012967 Ailuropoda melanoleuca Ame_R012967 I 0.000
CABZ01043311.1 Danio rerio ENSDARG00000078462 I 0.000
ENSPPYG00000007930 Pongo pygmaeus ENSPPYG00000007930 I 0.000
FXR1 Oryzias latipes ENSORLG00000011787 I 0.000
FXR1 Tetraodon nigroviridis ENSTNIG00000003790 I 0.000
FXR1 Gasterosteus aculeatus ENSGACG00000006052 I 0.000
fxr1 Danio rerio ENSDARG00000022968 I 0.000
FXR1 Takifugu rubripes ENSTRUG00000003486 I 0.000
FXR1 Meleagris gallopavo ENSMGAG00000009602 I 0.000
FXR2 Pan troglodytes ENSPTRG00000008698 I 0.000
FXR2 Procavia capensis ENSPCAG00000013184 I 0.000
FXR2 Pteropus vampyrus ENSPVAG00000016306 I 0.000
Fxr2 Rattus norvegicus ENSRNOG00000011876 I 0.000
FXR2 Sus scrofa ENSSSCG00000017953 I 0.000
FXR2 Spermophilus tridecemlineatus ENSSTOG00000005657 I 0.000
FXR2 Tupaia belangeri ENSTBEG00000002514 I 0.000
FXR2 Takifugu rubripes ENSTRUG00000010696 I 0.000
FXR2 Tursiops truncatus ENSTTRG00000010231 I 0.000
FXR2 Vicugna pacos ENSVPAG00000000147 I 0.000
FXR2 Tetraodon nigroviridis ENSTNIG00000005118 I 0.000
FXR2 Oryzias latipes ENSORLG00000011571 I 0.000
FXR2 Ochotona princeps ENSOPRG00000017108 I 0.000
FXR2 Echinops telfairi ENSETEG00000018613 I 0.000
FXR2 Erinaceus europaeus ENSEEUG00000013410 I 0.000
FXR2 Dasypus novemcinctus ENSDNOG00000001047 I 0.000
FXR2 Anolis carolinensis ENSACAG00000000561 I 0.000
FXR2 Cavia porcellus ENSCPOG00000023303 I 0.000
FXR2 Callithrix jacchus ENSCJAG00000015063 I 0.000
FXR2 Canis familiaris ENSCAFG00000016685 I 0.000
FXR2 Bos taurus ENSBTAG00000005462 I 0.000
FXR2 Felis catus ENSFCAG00000009620 I 0.000
FXR2 Homo sapiens ENSG00000129245 D 0.000
FXR2 Gasterosteus aculeatus ENSGACG00000019983 I 0.000
FXR2 Oryctolagus cuniculus ENSOCUG00000010393 I 0.000
Fxr2 Mus musculus ENSMUSG00000018765 I 0.000
FXR2 Monodelphis domestica ENSMODG00000007179 I 0.000
FXR2 Macaca mulatta ENSMMUG00000013510 I 0.000
FXR2 Myotis lucifugus ENSMLUG00000003438 I 0.000
FXR2 Microcebus murinus ENSMICG00000014799 I 0.000
FXR2 Loxodonta africana ENSLAFG00000001114 I 0.000
LOC100147323 Equus caballus ENSECAG00000007051 I 0.000
P51115 Xenopus laevis P51115 I 0.000
Q5F3S6_CHICK Gallus gallus ENSGALG00000008864 I 0.000
Q7ZTQ5 Xenopus laevis Q7ZTQ5 I 0.000