A6MKJ4_CALJA (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000002512 T35482_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.996
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.878
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.878
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.878
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.814
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000004606 RRM 13 83
ENSCJAP00000004606 RRM 101 169
ENSCJAP00000004606 RRM 193 262
ENSCJAP00000004606 RRM 296 364
ENSCJAP00000004611 RRM 46 114

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

180 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RDM1 Bos taurus ENSBTAG00000000030 N 0.000
LOC100388328 Callithrix jacchus ENSCJAG00000015031 N 0.000
RDM1 Choloepus hoffmanni ENSCHOG00000010041 N 0.000
LOC100063820 Equus caballus ENSECAG00000022182 N 0.000
RDM1 Erinaceus europaeus ENSEEUG00000006127 N 0.000
RDM1 Felis catus ENSFCAG00000003868 N 0.000
RDM1 Gorilla gorilla ENSGGOG00000010584 N 0.000
RDM1 Homo sapiens ENSG00000187456 N 0.000
RDM1 Loxodonta africana ENSLAFG00000029300 N 0.000
RDM1 Macaca mulatta ENSMMUG00000006847 N 0.000
RDM1 Macropus eugenii ENSMEUG00000015826 N 0.000
RDM1 Monodelphis domestica ENSMODG00000011101 N 0.000
Rdm1 Mus musculus ENSMUSG00000010362 N 0.000
RDM1 Oryctolagus cuniculus ENSOCUG00000022704 N 0.000
RDM1 Otolemur garnettii ENSOGAG00000011332 N 0.000
RDM1 Pan troglodytes ENSPTRG00000009031 N 0.000
ENSPPYG00000008198 Pongo pygmaeus ENSPPYG00000008198 N 0.000
RDM1 Pteropus vampyrus ENSPVAG00000001116 N 0.000
Rdm1 Rattus norvegicus ENSRNOG00000020751 N 0.000
ENSSSCG00000017574 Sus scrofa ENSSSCG00000017574 N 0.000
RDM1 Tupaia belangeri ENSTBEG00000010030 N 0.000