ENSOCUG00000023935 (Oryctolagus cuniculus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOCUG00000023935 T39762_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		1.000
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		1.000
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		1.000
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.935
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.878
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000020789 RRM 13 83
ENSOCUP00000020789 RRM 101 169
ENSOCUP00000020789 RRM 193 262
ENSOCUP00000020789 RRM 296 364

Links

Other RRM family RBPs
Other Oryctolagus cuniculus RBPs

180 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R011358 Ailuropoda melanoleuca Ame_R011358 N 0.000
ZC3H4 Anolis carolinensis ENSACAG00000003986 N 0.000
ZC3H4 Bos taurus ENSBTAG00000009286 N 0.000
ZC3H4 Canis familiaris ENSCAFG00000004182 N 0.000
ZC3H4 Callithrix jacchus ENSCJAG00000011601 N 0.000
ZC3H4 Cavia porcellus ENSCPOG00000012610 N 0.000
ZC3H4 Danio rerio ENSDARG00000078355 N 0.000
ZC3H4 Dasypus novemcinctus ENSDNOG00000003764 N 0.000
Zc3h4 Dipodomys ordii ENSDORG00000002726 N 0.000
ZC3H4 Equus caballus ENSECAG00000024342 N 0.000
ZC3H4 Echinops telfairi ENSETEG00000005763 N 0.000
ZC3H4 Homo sapiens ENSG00000130749 N 0.000
ZC3H4 Gasterosteus aculeatus ENSGACG00000012374 N 0.000
ZC3H4 Gorilla gorilla ENSGGOG00000013071 N 0.000
ZC3H4 Loxodonta africana ENSLAFG00000001586 N 0.000
ZC3H4 Microcebus murinus ENSMICG00000008786 N 0.000
ENSMLUG00000002995 Myotis lucifugus ENSMLUG00000002995 N 0.000
ENSMLUG00000010841 Myotis lucifugus ENSMLUG00000010841 N 0.000
ZC3H4 Macaca mulatta ENSMMUG00000014709 N 0.000
ZC3H4 Monodelphis domestica ENSMODG00000008978 N 0.000
Zc3h4 Mus musculus ENSMUSG00000059273 N 0.000
ZC3H4 Ornithorhynchus anatinus ENSOANG00000001794 N 0.000
ENSOCUG00000026069 Oryctolagus cuniculus ENSOCUG00000026069 N 0.000
ZC3H4 Otolemur garnettii ENSOGAG00000012833 N 0.000
ZC3H4 Ochotona princeps ENSOPRG00000014889 N 0.000
ENSPPYG00000010167 Pongo pygmaeus ENSPPYG00000010167 N 0.000
ZC3H4 Pteropus vampyrus ENSPVAG00000005687 N 0.000
LOC678741 Rattus norvegicus ENSRNOG00000015229 N 0.000
ZC3H4 Sorex araneus ENSSARG00000014146 N 0.000
ZC3H4 Sus scrofa ENSSSCG00000003110 N 0.000
ZC3H4 Spermophilus tridecemlineatus ENSSTOG00000016249 N 0.000
ZC3H4 Tetraodon nigroviridis ENSTNIG00000013432 N 0.000
ZC3H4 Takifugu rubripes ENSTRUG00000007843 N 0.000
ZC3H4 Tarsius syrichta ENSTSYG00000000926 N 0.000