CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PABPC1
(
Macaca mulatta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMMUG00000017786
T38949_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PABPC1
M349_0.6
Homo sapiens
ACDAAYM
SELEX
Cook et al.(2011)
950_7908267
1.000
PABPC1
M275_0.6
Homo sapiens
AAAAA
SELEX
Cook et al.(2011)
24_7908267
1.000
PABPC1
M146_0.6
Homo sapiens
ARAAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00155
1.000
PABPC3
M144_0.6
Homo sapiens
RAAAACM
RNAcompete
Ray et al.(2013)
RNCMPT00153
0.935
PABPC4
M042_0.6
Homo sapiens
AAAAAAR
RNAcompete
Ray et al.(2013)
RNCMPT00043
0.878
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMMUP00000015180
RRM
13
83
LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVR
ENSMMUP00000015180
RRM
101
169
IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF
ENSMMUP00000015180
RRM
193
262
VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY
ENSMMUP00000015180
RRM
296
364
LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY
ENSMMUP00000023390
RRM
13
83
LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVR
ENSMMUP00000023390
RRM
101
169
IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF
ENSMMUP00000023390
RRM
193
262
VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY
ENSMMUP00000023390
RRM
296
364
LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY
ENSMMUP00000023392
RRM
13
83
LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVR
ENSMMUP00000023392
RRM
101
169
IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF
ENSMMUP00000023392
RRM
193
262
VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY
ENSMMUP00000023392
RRM
296
364
LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY
Links
Other
RRM
family RBPs
Other
Macaca mulatta
RBPs
181 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSACAG00000017733
Anolis carolinensis
ENSACAG00000017733
N
0.000
CPSF7
Myotis lucifugus
ENSMLUG00000013278
N
0.000
CPSF7
Monodelphis domestica
ENSMODG00000020364
N
0.000
CPSF7
Oryctolagus cuniculus
ENSOCUG00000024726
N
0.000
CPSF7
Ochotona princeps
ENSOPRG00000008353
N
0.000
CPSF7
Procavia capensis
ENSPCAG00000009725
N
0.000
ENSPPYG00000003188
Pongo pygmaeus
ENSPPYG00000003188
N
0.000
CPSF7
Pan troglodytes
ENSPTRG00000003742
N
0.000
CPSF7
Pteropus vampyrus
ENSPVAG00000010675
N
0.000
CPSF7_RAT
Rattus norvegicus
ENSRNOG00000020668
N
0.000
CPSF7
Sus scrofa
ENSSSCG00000013083
N
0.000
CPSF7
Tupaia belangeri
ENSTBEG00000006496
N
0.000
CPSF7
Taeniopygia guttata
ENSTGUG00000006513
N
0.000
CPSF7
Tursiops truncatus
ENSTTRG00000011085
N
0.000
CPSF7
Microcebus murinus
ENSMICG00000013788
N
0.000
CPSF7
Meleagris gallopavo
ENSMGAG00000004876
N
0.000
Q3T0B3_BOVIN
Bos taurus
ENSBTAG00000015263
N
0.000
CPSF7
Canis familiaris
ENSCAFG00000016152
N
0.000
LOC100387773
Callithrix jacchus
ENSCJAG00000019282
N
0.000
CPSF7
Cavia porcellus
ENSCPOG00000009980
N
0.000
CPSF7
Dasypus novemcinctus
ENSDNOG00000018517
N
0.000
LOC100059747
Equus caballus
ENSECAG00000018521
N
0.000
CPSF7
Erinaceus europaeus
ENSEEUG00000005966
N
0.000
CPSF7
Echinops telfairi
ENSETEG00000003765
N
0.000
CPSF7
Felis catus
ENSFCAG00000013677
N
0.000
CPSF7
Homo sapiens
ENSG00000149532
N
0.000
CPSF7
Gallus gallus
ENSGALG00000013298
N
0.000
CPSF7
Loxodonta africana
ENSLAFG00000032084
N
0.000
CPSF7
Macropus eugenii
ENSMEUG00000002261
N
0.000
Ame_R014834
Ailuropoda melanoleuca
Ame_R014834
N
0.000