PABPC1 (Macaca mulatta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMMUG00000017786 T38949_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		1.000
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		1.000
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		1.000
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.935
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.878
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMMUP00000015180 RRM 13 83
ENSMMUP00000015180 RRM 101 169
ENSMMUP00000015180 RRM 193 262
ENSMMUP00000015180 RRM 296 364
ENSMMUP00000023390 RRM 13 83
ENSMMUP00000023390 RRM 101 169
ENSMMUP00000023390 RRM 193 262
ENSMMUP00000023390 RRM 296 364
ENSMMUP00000023392 RRM 13 83
ENSMMUP00000023392 RRM 101 169
ENSMMUP00000023392 RRM 193 262
ENSMMUP00000023392 RRM 296 364

Links

Other RRM family RBPs
Other Macaca mulatta RBPs

181 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSACAG00000017733 Anolis carolinensis ENSACAG00000017733 N 0.000
CPSF7 Myotis lucifugus ENSMLUG00000013278 N 0.000
CPSF7 Monodelphis domestica ENSMODG00000020364 N 0.000
CPSF7 Oryctolagus cuniculus ENSOCUG00000024726 N 0.000
CPSF7 Ochotona princeps ENSOPRG00000008353 N 0.000
CPSF7 Procavia capensis ENSPCAG00000009725 N 0.000
ENSPPYG00000003188 Pongo pygmaeus ENSPPYG00000003188 N 0.000
CPSF7 Pan troglodytes ENSPTRG00000003742 N 0.000
CPSF7 Pteropus vampyrus ENSPVAG00000010675 N 0.000
CPSF7_RAT Rattus norvegicus ENSRNOG00000020668 N 0.000
CPSF7 Sus scrofa ENSSSCG00000013083 N 0.000
CPSF7 Tupaia belangeri ENSTBEG00000006496 N 0.000
CPSF7 Taeniopygia guttata ENSTGUG00000006513 N 0.000
CPSF7 Tursiops truncatus ENSTTRG00000011085 N 0.000
CPSF7 Microcebus murinus ENSMICG00000013788 N 0.000
CPSF7 Meleagris gallopavo ENSMGAG00000004876 N 0.000
Q3T0B3_BOVIN Bos taurus ENSBTAG00000015263 N 0.000
CPSF7 Canis familiaris ENSCAFG00000016152 N 0.000
LOC100387773 Callithrix jacchus ENSCJAG00000019282 N 0.000
CPSF7 Cavia porcellus ENSCPOG00000009980 N 0.000
CPSF7 Dasypus novemcinctus ENSDNOG00000018517 N 0.000
LOC100059747 Equus caballus ENSECAG00000018521 N 0.000
CPSF7 Erinaceus europaeus ENSEEUG00000005966 N 0.000
CPSF7 Echinops telfairi ENSETEG00000003765 N 0.000
CPSF7 Felis catus ENSFCAG00000013677 N 0.000
CPSF7 Homo sapiens ENSG00000149532 N 0.000
CPSF7 Gallus gallus ENSGALG00000013298 N 0.000
CPSF7 Loxodonta africana ENSLAFG00000032084 N 0.000
CPSF7 Macropus eugenii ENSMEUG00000002261 N 0.000
Ame_R014834 Ailuropoda melanoleuca Ame_R014834 N 0.000