HNRNPA3 (Cavia porcellus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCPOG00000011301 T35832_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.879
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.879
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.879
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.857
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.800
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000010162 RRM 23 92
ENSCPOP00000010162 RRM 114 183

Links

Other RRM family RBPs
Other Cavia porcellus RBPs

292 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA49741 Xenopus laevis AAA49741 I 0.823
AAA49742 Xenopus laevis AAA49742 I 0.823
AAA49949 Xenopus laevis AAA49949 I 0.936
AAA49950 Xenopus laevis AAA49950 I 0.923
AAH45260 Xenopus laevis AAH45260 I 0.837
AAH72090 Xenopus laevis AAH72090 I 0.837
AAI69881 Xenopus laevis AAI69881 I 0.923
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.872
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.775
CBF67555 Xenopus laevis CBF67555 I 0.823
CBF67578 Xenopus laevis CBF67578 I 0.923
CBF67672 Xenopus laevis CBF67672 I 0.837
CBU92428 Xenopus laevis CBU92428 I 0.823
CBU92451 Xenopus laevis CBU92451 I 0.923
CBU92546 Xenopus laevis CBU92546 I 0.837
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.916
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.957
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.965
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.823
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.837
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.000
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.796
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.879
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.000
ENSCAFG00000000746 Canis familiaris ENSCAFG00000000746 I 0.000
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.755
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.782
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.000
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.748
ENSCAFG00000003921 Canis familiaris ENSCAFG00000003921 I 0.000
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.776
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.755
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.768
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.743
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.710
ENSCAFG00000006386 Canis familiaris ENSCAFG00000006386 I 0.000
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.703
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.830
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.765
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.771
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.000
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.736
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.705
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.717
ENSCAFG00000009606 Canis familiaris ENSCAFG00000009606 I 0.000
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.858
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.797
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.000
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 1.000
ENSCAFG00000013932 Canis familiaris ENSCAFG00000013932 I 0.000
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.775
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.733
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.790
ENSCAFG00000016707 Canis familiaris ENSCAFG00000016707 I 0.000
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.757
ENSCAFG00000017448 Canis familiaris ENSCAFG00000017448 I 0.000
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.000
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.762
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.000
ENSCAFG00000018580 Canis familiaris ENSCAFG00000018580 I 0.000
ENSCAFG00000019097 Canis familiaris ENSCAFG00000019097 I 0.000
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.776
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.785
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.769
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.000
ENSCAFG00000024636 Canis familiaris ENSCAFG00000024636 I 0.000
ENSCAFG00000024812 Canis familiaris ENSCAFG00000024812 I 0.000
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.734
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.757
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.768
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.796
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.727
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.797
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.768
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.817
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.715
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.000
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.768
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.000
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.710
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.930
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.816
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.810
ENSCJAG00000015222 Callithrix jacchus ENSCJAG00000015222 I 0.000
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.789
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.768
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.872
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.775
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.844
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.816
ENSCJAG00000032970 Callithrix jacchus ENSCJAG00000032970 I 0.718
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.766
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.872
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.796
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.993
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.851
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.872
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.830
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.858
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.739
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.739
ENSETEG00000001872 Echinops telfairi ENSETEG00000001872 I 0.000
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.796
ENSETEG00000018059 Echinops telfairi ENSETEG00000018059 I 0.000
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.872
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.872
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.000
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.837
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.000
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.746
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.858
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.879
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.782
ENSGGOG00000027762 Gorilla gorilla ENSGGOG00000027762 I 0.000
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.768
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.858
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.729
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.879
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.837
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.865
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.762
ENSMICG00000012083 Microcebus murinus ENSMICG00000012083 I 0.000
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.872
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.790
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.858
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 1.000
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.700
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.000
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.000
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.817
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.705
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.712
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.754
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.714
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.796
ENSMODG00000002376 Monodelphis domestica ENSMODG00000002376 I 0.000
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.741
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.762
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.851
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.865
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.872
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.851
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.858
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.865
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.810
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.844
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.858
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.865
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.872
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.858
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.000
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.851
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.000
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.865
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.830
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.766
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.937
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.000
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.950
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.830
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.879
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.872
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.830
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.796
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.782
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.739
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.818
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.837
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.000
ENSSARG00000008882 Sorex araneus ENSSARG00000008882 I 0.745
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.794
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.872
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.739
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.782
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.872
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.796
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.824
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.823
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.872
Gm8991 Mus musculus ENSMUSG00000059179 I 0.972
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.872
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.872
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.794
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.794
HNRNPA1 Homo sapiens ENSG00000135486 D 0.872
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.872
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.844
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.872
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.851
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.733
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 1.000
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.943
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.979
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 1.000
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.972
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 1.000
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.844
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 1.000
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.915
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.979
HNRNPA3 Homo sapiens ENSG00000170144 I 1.000
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.797
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 1.000
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.972
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 1.000
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 1.000
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.811
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 1.000
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 1.000
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.993
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 1.000
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.972
LOC100054206 Equus caballus ENSECAG00000006699 I 0.783
LOC100066794 Equus caballus ENSECAG00000023237 I 0.979
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 1.000
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.803
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.872
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.865
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.851
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.851
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 1.000
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.851
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.872
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.872
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.851
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.865
LOC781499 Bos taurus ENSBTAG00000021580 I 1.000
LOC785445 Bos taurus ENSBTAG00000025621 I 0.831
P17130 Xenopus laevis P17130 I 0.823
P51968 Xenopus laevis P51968 I 0.936
P51992 Xenopus laevis P51992 I 0.923
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.823
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.872
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.872
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.851
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.872
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.872
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.872
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 1.000
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.755
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.872
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.748
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.703
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.844
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.830
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.823
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.810
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.768
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.748
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.000
zgc:66127 Danio rerio ENSDARG00000011020 I 0.766