PABPC4 (Gallus gallus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGALG00000003800 T37625_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.939
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.892
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.892
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.892
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.828
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000006018 RRM 13 83
ENSGALP00000006018 RRM 101 169
ENSGALP00000006018 RRM 193 261
ENSGALP00000006018 RRM 296 364

Links

Other RRM family RBPs
Other Gallus gallus RBPs

184 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
185682 Helobdella robusta 185682 I 0.731
AAA60936 Xenopus laevis AAA60936 I 0.882
AAEL010318 Aedes aegypti AAEL010318 I 0.760
AAH52100 Xenopus laevis AAH52100 I 0.885
AAH71118 Xenopus laevis AAH71118 I 0.817
AAH72110 Xenopus laevis AAH72110 I 0.885
AAH73435 Xenopus laevis AAH73435 I 0.964
AAH80020 Xenopus laevis AAH80020 I 0.806
AAI08463 Xenopus laevis AAI08463 I 0.885
AAK29408 Xenopus laevis AAK29408 I 0.806
AGAP011092 Anopheles gambiae AGAP011092 I 0.749
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.753
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.753
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.753
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.864
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.781
Ame_R017927 Ailuropoda melanoleuca Ame_R017927 I 0.700
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.867
Aqu1.221418 Amphimedon queenslandica Aqu1.221418 N 0.708
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.732
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.767
Bm1_06880 Brugia malayi Bm1_06880 I 0.704
Bm1_16080 Brugia malayi Bm1_16080 I 0.708
CAA40721 Xenopus laevis CAA40721 I 0.885
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.763
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.763
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.706
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.738
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.709
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.932
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.832
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.896
PABPC1L Bos taurus ENSBTAG00000016849 I 0.789
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.939
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.892
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.939
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.778
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.731
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.935
PABPC4L Callithrix jacchus ENSCJAG00000003241 I 0.742
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.892
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.760
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.860
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.943
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.756
ENSCSAVG00000003102 Ciona savignyi ENSCSAVG00000003102 I 0.703
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.724
pabpc1l Danio rerio ENSDARG00000002597 I 0.796
pabpc1a Danio rerio ENSDARG00000017219 I 0.871
pabpc1b Danio rerio ENSDARG00000021140 I 0.854
pabpc4 Danio rerio ENSDARG00000059259 I 0.957
PABPC5 Equus caballus ENSECAG00000003452 I 0.700
LOC100054235 Equus caballus ENSECAG00000009396 I 0.939
LOC100056021 Equus caballus ENSECAG00000020699 I 0.774
LOC100070836 Equus caballus ENSECAG00000022681 I 0.778
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.928
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.767
PABPC1 Homo sapiens ENSG00000070756 D 0.892
PABPC4 Homo sapiens ENSG00000090621 D 0.939
PABPC1L Homo sapiens ENSG00000101104 I 0.771
PABPC3 Homo sapiens ENSG00000151846 D 0.828
ENSG00000250177 Homo sapiens ENSG00000250177 I 0.756
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.803
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.867
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.842
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.939
PABPC1L Gallus gallus ENSGALG00000004123 I 0.849
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.939
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.771
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.715
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.939
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.778
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.892
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.789
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.853
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.939
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.778
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.735
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.896
PABPC4 Myotis lucifugus ENSMLUG00000012068 I 0.710
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.939
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.774
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.892
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.846
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.889
ENSMODG00000012040 Monodelphis domestica ENSMODG00000012040 I 0.703
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.792
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.746
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.806
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.860
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.982
ENSMODG00000018051 Monodelphis domestica ENSMODG00000018051 N 0.716
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.921
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.896
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.839
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.839
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.728
Gm10110 Mus musculus ENSMUSG00000062093 I 0.925
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.896
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.986
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.935
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.789
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.892
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.892
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.796
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.892
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.778
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.939
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.878
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.857
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.781
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.939
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.835
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.939
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.853
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.771
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.892
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.939
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.774
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.889
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.839
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.778
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.892
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.896
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.731
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.839
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.925
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.842
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.900
Pabpc4l Rattus norvegicus ENSRNOG00000029749 N 0.705
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.939
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.892
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.789
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.803
PABPC5 Tupaia belangeri ENSTBEG00000016482 I 0.700
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.982
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.821
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.896
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.867
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.842
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.946
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.724
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.864
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.950
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.796
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.878
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.871
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.763
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.892
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.756
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.892
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.896
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.799
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.735
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.721
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.756
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.735
e_gw1.7.538.1 Trichoplax adhaerens e_gw1.7.538.1 I 0.701
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.717
GF12652 Drosophila ananassae FBgn0089688 I 0.710
GG21846 Drosophila erecta FBgn0114024 I 0.714
GH21052 Drosophila grimshawi FBgn0128514 I 0.725
GI18654 Drosophila mojavensis FBgn0141393 I 0.722
GL11548 Drosophila persimilis FBgn0149157 I 0.717
GM21847 Drosophila sechellia FBgn0176724 I 0.710
GD11341 Drosophila simulans FBgn0183090 I 0.710
GJ21671 Drosophila virilis FBgn0208790 I 0.721
GK19652 Drosophila willistoni FBgn0221650 I 0.721
GE11925 Drosophila yakuba FBgn0229707 I 0.717
pAbp Drosophila melanogaster FBgn0261619 D 0.710
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.743
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.756
ISCW014211 Ixodes scapularis ISCW014211 I 0.768
LOAG_01058 Loa loa LOAG_01058 I 0.708
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.749
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.749
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.749
P20965 Xenopus laevis P20965 I 0.885
PHUM617090 Pediculus humanus PHUM617090 I 0.767
Q6GR16 Xenopus laevis Q6GR16 I 0.817
Q6IP09 Xenopus laevis Q6IP09 I 0.885
Q98SP8 Xenopus laevis Q98SP8 I 0.806
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.725
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.725