PABPC4 (Gallus gallus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGALG00000003800 T37625_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.939
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.892
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.892
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.892
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.828
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000006018 RRM 13 83
ENSGALP00000006018 RRM 101 169
ENSGALP00000006018 RRM 193 261
ENSGALP00000006018 RRM 296 364

Links

Other RRM family RBPs
Other Gallus gallus RBPs

184 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
13113.t00051 Oryza sativa 13113.t00051 N 0.000
LOC_Os08g10370 Oryza sativa LOC_Os08g10370 N 0.000
LOC_Os08g11740 Oryza sativa LOC_Os08g11740 N 0.000
LOC_Os08g11860 Oryza sativa LOC_Os08g11860 N 0.000
LOC_Os08g16510 Oryza sativa LOC_Os08g16510 N 0.000
LOC_Os08g19510 Oryza sativa LOC_Os08g19510 N 0.000
LOC_Os08g19570 Oryza sativa LOC_Os08g19570 N 0.000
LOC_Os08g20700 Oryza sativa LOC_Os08g20700 N 0.000
LOC_Os09g01010 Oryza sativa LOC_Os09g01010 N 0.000
LOC_Os09g03060 Oryza sativa LOC_Os09g03060 N 0.000
LOC_Os10g03020 Oryza sativa LOC_Os10g03020 N 0.000
LOC_Os10g18970 Oryza sativa LOC_Os10g18970 N 0.000
LOC_Os10g24290 Oryza sativa LOC_Os10g24290 N 0.000
LOC_Os11g17180 Oryza sativa LOC_Os11g17180 N 0.000
LOC_Os11g26270 Oryza sativa LOC_Os11g26270 N 0.000
LOC_Os11g26370 Oryza sativa LOC_Os11g26370 N 0.000
LOC_Os12g18310 Oryza sativa LOC_Os12g18310 N 0.000
LOC_Os07g45850 Oryza sativa LOC_Os07g45850 N 0.000
LOC_Os07g33170 Oryza sativa LOC_Os07g33170 N 0.000
bhlh128 Oryza sativa LOC_Os07g13000 N 0.000
LOC_Os01g38049 Oryza sativa LOC_Os01g38049 N 0.000
LOC_Os01g38058 Oryza sativa LOC_Os01g38058 N 0.000
LOC_Os02g27930 Oryza sativa LOC_Os02g27930 N 0.000
LOC_Os02g30000 Oryza sativa LOC_Os02g30000 N 0.000
LOC_Os03g61370 Oryza sativa LOC_Os03g61370 N 0.000
LOC_Os04g04820 Oryza sativa LOC_Os04g04820 N 0.000
LOC_Os04g05340 Oryza sativa LOC_Os04g05340 N 0.000
LOC_Os04g07730 Oryza sativa LOC_Os04g07730 N 0.000
LOC_Os04g15999 Oryza sativa LOC_Os04g15999 N 0.000
LOC_Os04g16649 Oryza sativa LOC_Os04g16649 N 0.000
LOC_Os05g17340 Oryza sativa LOC_Os05g17340 N 0.000
LOC_Os05g17900 Oryza sativa LOC_Os05g17900 N 0.000
LOC_Os05g20490 Oryza sativa LOC_Os05g20490 N 0.000
LOC_Os05g25740 Oryza sativa LOC_Os05g25740 N 0.000
LOC_Os05g44500 Oryza sativa LOC_Os05g44500 N 0.000
LOC_Os06g36900 Oryza sativa LOC_Os06g36900 N 0.000
LOC_Os12g24940 Oryza sativa LOC_Os12g24940 N 0.000