ENSOANG00000010001 (Ornithorhynchus anatinus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOANG00000010001 T39526_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.928
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.889
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.889
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.889
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.824
pAbp
M130_0.6 		Drosophila melanogaster GAAAAHV RNAcompete
Ray et al.(2013)
RNCMPT00139 		0.703
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOANP00000015854 RRM 13 83
ENSOANP00000015854 RRM 101 169
ENSOANP00000015854 RRM 193 261
ENSOANP00000015854 RRM 296 364
ENSOANP00000015855 RRM 13 83
ENSOANP00000015855 RRM 101 169
ENSOANP00000015855 RRM 193 261
ENSOANP00000015855 RRM 296 364

Links

Other RRM family RBPs
Other Ornithorhynchus anatinus RBPs

183 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
185682 Helobdella robusta 185682 I 0.731
AAA60936 Xenopus laevis AAA60936 I 0.875
AAEL010318 Aedes aegypti AAEL010318 I 0.760
AAH52100 Xenopus laevis AAH52100 I 0.878
AAH71118 Xenopus laevis AAH71118 I 0.814
AAH72110 Xenopus laevis AAH72110 I 0.885
AAH73435 Xenopus laevis AAH73435 I 0.971
AAH80020 Xenopus laevis AAH80020 I 0.803
AAI08463 Xenopus laevis AAI08463 I 0.885
AAK29408 Xenopus laevis AAK29408 I 0.803
AGAP011092 Anopheles gambiae AGAP011092 I 0.753
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.756
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.756
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.756
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.860
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.781
Ame_R017927 Ailuropoda melanoleuca Ame_R017927 I 0.704
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.860
Aqu1.221418 Amphimedon queenslandica Aqu1.221418 N 0.708
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.736
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.760
Bm1_16080 Brugia malayi Bm1_16080 I 0.701
CAA40721 Xenopus laevis CAA40721 I 0.878
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.763
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.763
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.727
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.924
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.828
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.892
PABPC1L Bos taurus ENSBTAG00000016849 I 0.789
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.932
PABPC5 Bos taurus ENSBTAG00000019942 I 0.700
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.889
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.932
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.781
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.731
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.925
PABPC4L Callithrix jacchus ENSCJAG00000003241 I 0.742
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.889
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.760
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.860
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.935
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.756
ENSCSAVG00000003102 Ciona savignyi ENSCSAVG00000003102 I 0.703
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.724
pabpc1l Danio rerio ENSDARG00000002597 I 0.792
pabpc1a Danio rerio ENSDARG00000017219 I 0.871
pabpc1b Danio rerio ENSDARG00000021140 I 0.850
pabpc4 Danio rerio ENSDARG00000059259 I 0.950
PABPC5 Equus caballus ENSECAG00000003452 I 0.704
LOC100054235 Equus caballus ENSECAG00000009396 I 0.932
LOC100056021 Equus caballus ENSECAG00000020699 I 0.771
LOC100070836 Equus caballus ENSECAG00000022681 I 0.781
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.928
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.767
PABPC1 Homo sapiens ENSG00000070756 D 0.889
PABPC4 Homo sapiens ENSG00000090621 D 0.928
PABPC1L Homo sapiens ENSG00000101104 I 0.771
PABPC3 Homo sapiens ENSG00000151846 D 0.824
ENSG00000250177 Homo sapiens ENSG00000250177 I 0.756
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.796
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.871
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.842
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.939
PABPC4 Gallus gallus ENSGALG00000003800 I 0.986
PABPC1L Gallus gallus ENSGALG00000004123 I 0.846
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.928
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.771
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.711
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.932
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.778
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.889
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.785
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.849
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.932
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.774
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.731
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.892
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.932
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.774
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.889
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.842
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.886
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.792
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.749
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.803
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.857
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.975
ENSMODG00000018051 Monodelphis domestica ENSMODG00000018051 N 0.709
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.914
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.892
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.835
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.832
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.724
Gm10110 Mus musculus ENSMUSG00000062093 I 0.918
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.892
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.928
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.789
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.889
PABPC5 Oryctolagus cuniculus ENSOCUG00000010919 I 0.700
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.889
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.789
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.889
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.778
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.925
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.875
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.853
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.777
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.932
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.828
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.928
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.849
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.771
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.889
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.928
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.774
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.885
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.835
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.781
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.889
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.892
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.728
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.832
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.918
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.839
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.892
Pabpc4l Rattus norvegicus ENSRNOG00000029749 N 0.712
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.932
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.889
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.792
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.796
PABPC5 Tupaia belangeri ENSTBEG00000016482 I 0.700
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.968
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.817
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.892
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.864
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.846
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.946
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.717
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.860
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.950
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.789
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.878
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.867
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.763
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.889
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.763
PABPC5 Vicugna pacos ENSVPAG00000001063 I 0.700
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.892
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.903
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.792
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.728
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.717
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.749
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.731
e_gw1.7.538.1 Trichoplax adhaerens e_gw1.7.538.1 I 0.701
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.721
GF12652 Drosophila ananassae FBgn0089688 I 0.714
GG21846 Drosophila erecta FBgn0114024 I 0.717
GH21052 Drosophila grimshawi FBgn0128514 I 0.729
GI18654 Drosophila mojavensis FBgn0141393 I 0.725
GL11548 Drosophila persimilis FBgn0149157 I 0.721
GM21847 Drosophila sechellia FBgn0176724 I 0.714
GD11341 Drosophila simulans FBgn0183090 I 0.714
GJ21671 Drosophila virilis FBgn0208790 I 0.724
GK19652 Drosophila willistoni FBgn0221650 I 0.724
GE11925 Drosophila yakuba FBgn0229707 I 0.721
pAbp Drosophila melanogaster FBgn0261619 D 0.714
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.743
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.749
ISCW014211 Ixodes scapularis ISCW014211 I 0.768
LOAG_01058 Loa loa LOAG_01058 I 0.701
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.749
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.749
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.749
P20965 Xenopus laevis P20965 I 0.878
PHUM617090 Pediculus humanus PHUM617090 I 0.760
Q6GR16 Xenopus laevis Q6GR16 I 0.814
Q6IP09 Xenopus laevis Q6IP09 I 0.885
Q98SP8 Xenopus laevis Q98SP8 I 0.803
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.725
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.725