Pabpc4 (Mus musculus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMUSG00000011257 T39243_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.971
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.871
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.871
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.871
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.806
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000077794 RRM 13 83
ENSMUSP00000077794 RRM 101 169
ENSMUSP00000077794 RRM 193 262
ENSMUSP00000077794 RRM 296 364
ENSMUSP00000079070 RRM 13 83
ENSMUSP00000079070 RRM 101 169
ENSMUSP00000079070 RRM 193 262
ENSMUSP00000079070 RRM 296 364
ENSMUSP00000091744 RRM 30 98
ENSMUSP00000091744 RRM 122 191
ENSMUSP00000091744 RRM 225 293
ENSMUSP00000101848 RRM 13 83
ENSMUSP00000101848 RRM 101 169
ENSMUSP00000101848 RRM 193 262
ENSMUSP00000101848 RRM 296 364
ENSMUSP00000101850 RRM 13 83
ENSMUSP00000101850 RRM 101 169
ENSMUSP00000101850 RRM 193 262
ENSMUSP00000101850 RRM 296 364

Links

Other RRM family RBPs
Other Mus musculus RBPs

187 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.710
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.710
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.735
AAEL010318 Aedes aegypti AAEL010318 I 0.746
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.842
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.789
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.907
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.806
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.875
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.857
AGAP011092 Anopheles gambiae AGAP011092 I 0.742
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.746
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.746
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.746
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.760
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.975
PABPC1L Bos taurus ENSBTAG00000016849 I 0.796
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.746
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.746
Bm1_06880 Brugia malayi Bm1_06880 I 0.708
Bm1_16080 Brugia malayi Bm1_16080 I 0.711
PABPC4L Callithrix jacchus ENSCJAG00000003241 I 0.717
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.871
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.842
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.774
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.968
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.785
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.975
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.871
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.735
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.975
ENSCPOG00000012917 Cavia porcellus ENSCPOG00000012917 N 0.846
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.760
PABPC4 Choloepus hoffmanni ENSCHOG00000005327 N 0.962
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.728
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.728
ENSCSAVG00000003102 Ciona savignyi ENSCSAVG00000003102 I 0.703
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.749
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.749
pabpc1l Danio rerio ENSDARG00000002597 I 0.781
pabpc1a Danio rerio ENSDARG00000017219 I 0.842
pabpc1b Danio rerio ENSDARG00000021140 I 0.836
pabpc4 Danio rerio ENSDARG00000059259 I 0.914
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.725
ENSDNOG00000008718 Dasypus novemcinctus ENSDNOG00000008718 N 0.803
Pabpc1 Dipodomys ordii ENSDORG00000013935 N 0.750
GG21846 Drosophila erecta FBgn0114024 I 0.701
GH21052 Drosophila grimshawi FBgn0128514 I 0.718
GI18654 Drosophila mojavensis FBgn0141393 I 0.711
GL11548 Drosophila persimilis FBgn0149157 I 0.704
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.704
GJ21671 Drosophila virilis FBgn0208790 I 0.715
GK19652 Drosophila willistoni FBgn0221650 I 0.708
GE11925 Drosophila yakuba FBgn0229707 I 0.704
LOC100070836 Equus caballus ENSECAG00000022681 I 0.789
LOC100056021 Equus caballus ENSECAG00000020699 I 0.756
LOC100054235 Equus caballus ENSECAG00000009396 I 0.975
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.781
ENSEEUG00000002701 Erinaceus europaeus ENSEEUG00000002701 N 0.798
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.957
PABPC4 Felis catus ENSFCAG00000015254 N 0.779
Q5ZL53_CHICK Gallus gallus ENSGALG00000014450 N 0.851
PABPC1L Gallus gallus ENSGALG00000004123 I 0.810
PABPC4 Gallus gallus ENSGALG00000003800 I 0.921
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.821
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.835
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.907
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.789
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.971
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.785
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.846
185682 Helobdella robusta 185682 I 0.707
PABPC1 Homo sapiens ENSG00000070756 D 0.871
ENSG00000250177 Homo sapiens ENSG00000250177 I 0.731
PABPC4 Homo sapiens ENSG00000090621 D 0.971
PABPC1L Homo sapiens ENSG00000101104 I 0.785
PABPC3 Homo sapiens ENSG00000151846 D 0.806
ISCW014211 Ixodes scapularis ISCW014211 I 0.750
LOAG_01058 Loa loa LOAG_01058 I 0.711
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.707
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.721
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.871
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.778
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.975
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.824
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.789
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.975
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.871
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.789
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.814
ENSMGAG00000005408 Meleagris gallopavo ENSMGAG00000005408 N 0.904
ENSMGAG00000012239 Meleagris gallopavo ENSMGAG00000012239 N 0.847
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.928
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.728
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.789
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.975
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.789
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.796
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.835
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.925
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.731
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.868
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.817
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.875
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.746
Gm10110 Mus musculus ENSMUSG00000062093 I 0.996
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.814
PABPC4 Myotis lucifugus ENSMLUG00000012068 I 0.739
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.742
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.742
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.742
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.711
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.871
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.781
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.964
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.875
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.914
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.871
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.871
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.968
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.799
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.777
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.842
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.910
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.835
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.828
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.971
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.867
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.817
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.789
PHUM617090 Pediculus humanus PHUM617090 I 0.770
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.871
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.785
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.839
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.971
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.871
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.871
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.778
PABPC4 Pteropus vampyrus ENSPVAG00000002187 N 0.966
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.817
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.975
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.742
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.875
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.821
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.950
PABPC4 Sorex araneus ENSSARG00000000310 N 0.971
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.828
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.706
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.736
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.736
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.978
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.871
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.799
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.875
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.796
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.914
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.839
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.842
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.785
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.907
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.849
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.774
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.811
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.839
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.900
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.721
e_gw1.7.538.1 Trichoplax adhaerens e_gw1.7.538.1 I 0.708
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.871
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.763
ENSVPAG00000003865 Vicugna pacos ENSVPAG00000003865 N 0.846
P20965 Xenopus laevis P20965 I 0.846
AAI08463 Xenopus laevis AAI08463 I 0.860
AAK29408 Xenopus laevis AAK29408 I 0.799
CAA40721 Xenopus laevis CAA40721 I 0.846
Q6IP09 Xenopus laevis Q6IP09 I 0.860
Q6GR16 Xenopus laevis Q6GR16 I 0.803
AAH80020 Xenopus laevis AAH80020 I 0.799
AAH73435 Xenopus laevis AAH73435 I 0.910
AAH72110 Xenopus laevis AAH72110 I 0.860
AAH71118 Xenopus laevis AAH71118 I 0.803
AAH52100 Xenopus laevis AAH52100 I 0.846
AAA60936 Xenopus laevis AAA60936 I 0.842
Q98SP8 Xenopus laevis Q98SP8 I 0.799
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.860
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.785
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.846