AAA49742 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAA49742 T59417_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.907
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.907
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.907
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.886
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.793
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAA49742 RRM 16 85
AAA49742 RRM 107 176

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

294 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_fgenesh2_kg.C_20554 Agaricus bisporus estExt_fgenesh2_kg.C_20554 N 0.000
Ame_R008803 Ailuropoda melanoleuca Ame_R008803 N 0.000
AMAG_07778 Allomyces macrogynus AMAG_07778 N 0.000
AMAG_09721 Allomyces macrogynus AMAG_09721 N 0.000
Aqu1.217752 Amphimedon queenslandica Aqu1.217752 N 0.000
AGAP007912 Anopheles gambiae AGAP007912 N 0.000
fgenesh1_pm.00866_#_279 Aspergillus carbonarius fgenesh1_pm.00866_#_279 N 0.000
ANIA_05875 Aspergillus nidulans CADANIAG00007161 N 0.000
An02g03350 Aspergillus niger CADANGAG00001848 N 0.000
ATEG_01441 Aspergillus terreus CADATEAG00000360 N 0.000
estExt_fgenesh1_pg.C_70293 Batrachochytrium dendrobatidis estExt_fgenesh1_pg.C_70293 N 0.000
BDBG_00628 Blastomyces dermatitidis BDBG_00628 N 0.000
KRR1_BOVIN Bos taurus ENSBTAG00000011591 N 0.000
LOC100407700 Callithrix jacchus ENSCJAG00000001181 N 0.000
KRR1 Candida albicans orf19.661 N 0.000
Cd36_10710 Candida dubliniensis Cd36_10710 N 0.000
PGUG_03304 Candida guilliermondii PGUG_03304 N 0.000
CLUG_04903 Candida lusitaniae CLUG_04903 N 0.000
CPAG_00706 Candida parapsilosis CPAG_00706 N 0.000
CTRG_04103 Candida tropicalis CTRG_04103 N 0.000
XM_846783.1 Canis familiaris ENSCAFG00000005665 N 0.000
KRR1 Cavia porcellus ENSCPOG00000014353 N 0.000
pasa_Sanger_mRNA6968 Chlamydomonas reinhardtii pasa_Sanger_mRNA6968 N 0.000
estExt_fgenesh3_pg.C_140192 Chlorella NC64A estExt_fgenesh3_pg.C_140192 N 0.000
estExt_Genewise1Plus.C_20668 Chlorella vulgaris estExt_Genewise1Plus.C_20668 N 0.000
KRR1 Choloepus hoffmanni ENSCHOG00000009636 N 0.000
estExt_Genewise1.C_20589 Coccomyxa C 169 estExt_Genewise1.C_20589 N 0.000
GLRG_02756 Colletotrichum graminicola GLRG_02756 N 0.000
CC1G_09940 Coprinopsis cinerea CC1G_09940 N 0.000
gw1.3.2120.1 Cryphonectria parasitica gw1.3.2120.1 N 0.000
CNBG_5932 Cryptococcus neoformans CNBG_5932 N 0.000
Chro.30334 Cryptosporidium hominis Chro.30334 N 0.000
CMU_000450 Cryptosporidium muris CMU_000450 N 0.000
cgd3_2950 Cryptosporidium parvum cgd3_2950 N 0.000
CMR456C Cyanidioschyzon merolae CMR456C N 0.000
KRR1 Danio rerio ENSDARG00000011246 N 0.000
KRR1 Dasypus novemcinctus ENSDNOG00000015614 N 0.000
DEHA0E14685g Debaryomyces hansenii DEHA0E14685g N 0.000
Krr1 Dipodomys ordii ENSDORG00000004614 N 0.000
GG24622 Drosophila erecta FBgn0116754 N 0.000
dbe Drosophila melanogaster FBgn0020305 N 0.000
GI18007 Drosophila mojavensis FBgn0140747 N 0.000
GL18627 Drosophila persimilis FBgn0156228 N 0.000
GA18062-RA Drosophila pseudoobscura FBgn0078070 N 0.000
GJ19628 Drosophila virilis FBgn0206770 N 0.000
GK24616 Drosophila willistoni FBgn0226576 N 0.000
GE15854 Drosophila yakuba FBgn0233416 N 0.000
LOC100050169 Equus caballus ENSECAG00000017498 N 0.000
KRR1 Erinaceus europaeus ENSEEUG00000001466 N 0.000
KRR1 Felis catus ENSFCAG00000005207 N 0.000
FGSG_06203 Fusarium graminearum FGSG_06203 N 0.000
FVEG_06170 Fusarium verticillioides FVEG_06170 N 0.000
KRR1 Gasterosteus aculeatus ENSGACG00000019481 N 0.000
KRR1 Gorilla gorilla ENSGGOG00000013596 N 0.000
Genemark.4150_g Heterobasidion annosum Genemark.4150_g N 0.000
KRR1 Homo sapiens ENSG00000111615 N 0.000
KLLA0C00506g Kluyveromyces lactis KLLA0C00506g N 0.000
KLTH0F00506g Kluyveromyces thermotolerans KLTH0F00506g N 0.000
Kwal_13011 Kluyveromyces waltii Kwal_13011 N 0.000
eu2.Lbscf0025g00750 Laccaria bicolor eu2.Lbscf0025g00750 N 0.000
SAKL0C00484g Lachancea kluyveri SAKL0C00484g N 0.000
LELG_00899 Lodderomyces elongisporus LELG_00899 N 0.000
KRR1 Loxodonta africana ENSLAFG00000015986 N 0.000
KRR1 Macaca mulatta ENSMMUG00000009640 N 0.000
KRR1 Macropus eugenii ENSMEUG00000011365 N 0.000
EDP43963.1 Malassezia globosa EDP43963.1 N 0.000
MDP0000221204 Malus x domestica MDP0000221204 N 0.000
MDP0000130613 Malus x domestica MDP0000130613 N 0.000
Medtr5g094630 Medicago truncatula Medtr5g094630 N 0.000
estExt_Genewise1Plus.C_250151 Melampsora laricis populina estExt_Genewise1Plus.C_250151 N 0.000
gw1.1.562.1 Micromonas pusilla gw1.1.562.1 N 0.000
KRR1 Monodelphis domestica ENSMODG00000020451 N 0.000
estExt_fgenesh2_pg.C_210023 Monosiga brevicollis estExt_fgenesh2_pg.C_210023 N 0.000
e_gw1.1.604.1 Mucor circinelloides e_gw1.1.604.1 N 0.000
Krr1 Mus musculus ENSMUSG00000063334 N 0.000
estExt_Genewise1.C_80450 Myceliophthora thermophila estExt_Genewise1.C_80450 N 0.000
e_gw1.11.691.1 Mycosphaerella fijiensis e_gw1.11.691.1 N 0.000
estExt_fgenesh1_pg.C_chr_50346 Mycosphaerella graminicola estExt_fgenesh1_pg.C_chr_50346 N 0.000
NCLIV_025560 Neospora caninum NCLIV_025560 N 0.000
NCU07041 Neurospora crassa NCU07041 N 0.000
estExt_Genewise1Plus.C_120457 Neurospora discreta estExt_Genewise1Plus.C_120457 N 0.000
estExt_Genewise1.C_250056 Neurospora tetrasperma estExt_Genewise1.C_250056 N 0.000
KRR1 Ochotona princeps ENSOPRG00000011858 N 0.000
KRR1 Oryctolagus cuniculus ENSOCUG00000003925 N 0.000
eugene.0700010461 Ostreococcus lucimarinus eugene.0700010461 N 0.000
e_gw1.7.303.1 Ostreococcus RCC809 e_gw1.7.303.1 N 0.000
e_gw1.07.00.268.1 Ostreococcus tauri e_gw1.07.00.268.1 N 0.000
KRR1 Otolemur garnettii ENSOGAG00000010313 N 0.000
XR_025480.1 Pan troglodytes ENSPTRG00000005238 N 0.000
GSPATP00022892001 Paramecium tetraurelia GSPATP00022892001 N 0.000
Pc15g00270 Penicillium chrysogenum Pc15g00270 N 0.000
PMAA_048600 Penicillium marneffei PMAA_048600 N 0.000
PHATRDRAFT_45441 Phaeodactylum tricornutum Phatr45441 N 0.000
e_gwh2.2.654.1 Phanerochaete chrysosporium e_gwh2.2.654.1 N 0.000
e_gw1.10.100.1 Phycomyces blakesleeanus e_gw1.10.100.1 N 0.000
XP_002489989.1 Pichia pastoris XP_002489989.1 N 0.000
e_gwh1.2.1.2136.1 Pichia stipitis e_gwh1.2.1.2136.1 N 0.000
fgenesh1_pm.C_scaffold_4000135 Pleurotus ostreatus fgenesh1_pm.C_scaffold_4000135 N 0.000
PredSwiss_ASS2010_156.1 Pneumocystis carinii PredSwiss_ASS2010_156.1 N 0.000
Pa_1_24010 Podospora anserina Pa_1_24010 N 0.000
ENSPPYG00000004785 Pongo pygmaeus ENSPPYG00000004785 N 0.000
KRR1 Pteropus vampyrus ENSPVAG00000000529 N 0.000
Hrb2 Rattus norvegicus ENSRNOG00000004035 N 0.000
RO3G_15602 Rhizopus oryzae RO3G_15602 N 0.000
2380_YCL059C Saccharomyces bayanus 2380_YCL059C N 0.000
KRR1 Saccharomyces cerevisiae YCL059C N 0.000
Skud_Contig2065.14 Saccharomyces kudriavzevii Skud_Contig2065.14 N 0.000
2245_YCL059C Saccharomyces mikatae 2245_YCL059C N 0.000
2217_YCL059C Saccharomyces paradoxus 2217_YCL059C N 0.000
PTSG_07198 Salpingoeca rosetta PTSG_07198 N 0.000
e_gw1.1.3483.1 Schizophyllum commune e_gw1.1.3483.1 N 0.000
mis3 Schizosaccharomyces pombe SPBC25B2.05 N 0.000
fgenesh2_kg.4_#_366_#_2882_1_CFPN Serpula lacrymans fgenesh2_kg.4_#_366_#_2882_1_CFPN N 0.000
KRR1 Sorex araneus ENSSARG00000009967 N 0.000
KRR1 Spermophilus tridecemlineatus ENSSTOG00000003620 N 0.000
SPPG_02913 Spizellomyces punctatus SPPG_02913 N 0.000
estExt_Genewise1Plus.C_20041 Sporobolomyces roseus estExt_Genewise1Plus.C_20041 N 0.000
XP_001186312.1 Strongylocentrotus purpuratus XP_001186312.1 N 0.000
XP_786725.1 Strongylocentrotus purpuratus XP_786725.1 N 0.000
KRR1 Sus scrofa ENSSSCG00000000520 N 0.000
KRR1 Takifugu rubripes ENSTRUG00000004380 N 0.000
KRR1 Tarsius syrichta ENSTSYG00000009394 N 0.000
THAPSDRAFT_268598 Thalassiosira pseudonana Thaps268598 N 0.000
estExt_fgenesh2_pm.C_40064 Thielavia terrestris estExt_fgenesh2_pm.C_40064 N 0.000
TGME49_062070 Toxoplasma gondii TGME49_062070 N 0.000
TGVEG_072780 Toxoplasma gondii TGVEG_072780 N 0.000
TGGT1_008040 Toxoplasma gondii TGGT1_008040 N 0.000
e_gw1.7.291.1 Tremella mesenterica e_gw1.7.291.1 N 0.000
GSTUMT00008009001 Tuber melanosporum GSTUMT00008009001 N 0.000
KRR1 Tupaia belangeri ENSTBEG00000008145 N 0.000
KRR1 Tursiops truncatus ENSTTRG00000001661 N 0.000
UM03241 Ustilago maydis UM03241 N 0.000
A7TFC5_VANPO Vanderwaltozyma polyspora A7TFC5_VANPO N 0.000
KRR1 Vicugna pacos ENSVPAG00000011750 N 0.000
estExt_fgenesh4_pg.C_90052 Volvox carteri estExt_fgenesh4_pg.C_90052 N 0.000
YALI0F30393g Yarrowia lipolytica YALI0F30393g N 0.000
ZYRO0F18458g Zygosaccharomyces rouxii ZYRO0F18458g N 0.000