CBU92428 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CBU92428 T59700_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.907
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.907
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.907
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.886
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.793
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CBU92428 RRM 16 85
CBU92428 RRM 107 176

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

294 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.000
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.000
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.000
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.000
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.000
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.000
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.000
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.000
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.000
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.000
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.000
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.000
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.000
PK26094.1 Cannabis sativa PK26094.1 N 0.000
PK02315.1 Cannabis sativa PK02315.1 N 0.000
PK17832.1 Cannabis sativa PK17832.1 N 0.000
PK23104.1 Cannabis sativa PK23104.1 N 0.000
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.000
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.000
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.000
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.000
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.000
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.000
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.000
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.000
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.000
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.000
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.000
Glyma16g00490.1 Glycine max Glyma16g00490.1 N 0.000
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.000
LjSGA_044186.1 Lotus japonicus LjSGA_044186.1 N 0.000
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.000
LjSGA_073042.1 Lotus japonicus LjSGA_073042.1 N 0.000
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.000
chr6.CM0885.260.nc Lotus japonicus chr6.CM0885.260.nc N 0.000
chr6.CM0885.320.nc Lotus japonicus chr6.CM0885.320.nc N 0.000
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.000
MDP0000617859 Malus x domestica MDP0000617859 N 0.000
MDP0000552419 Malus x domestica MDP0000552419 N 0.000
MDP0000488248 Malus x domestica MDP0000488248 N 0.000
MDP0000405927 Malus x domestica MDP0000405927 N 0.000
MDP0000306387 Malus x domestica MDP0000306387 N 0.000
MDP0000287088 Malus x domestica MDP0000287088 N 0.000
MDP0000286471 Malus x domestica MDP0000286471 N 0.000
MDP0000256033 Malus x domestica MDP0000256033 N 0.000
MDP0000248088 Malus x domestica MDP0000248088 N 0.000
MDP0000171737 Malus x domestica MDP0000171737 N 0.000
MDP0000132385 Malus x domestica MDP0000132385 N 0.000
MDP0000231231 Malus x domestica MDP0000231231 N 0.000
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.000
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.000
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.000
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.000
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.000
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.000
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.000
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.000
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.000
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.000
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.000
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.000
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.000
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.000
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.000
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.000
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.000
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.000
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.000
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.000
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.000
mgf009938m Mimulus guttatus mgf009938m N 0.000
mgf001716m Mimulus guttatus mgf001716m N 0.000
mgf013853m Mimulus guttatus mgf013853m N 0.000
mgf014143m Mimulus guttatus mgf014143m N 0.000
mgf015583m Mimulus guttatus mgf015583m N 0.000
mgf017987m Mimulus guttatus mgf017987m N 0.000
mgf019846m Mimulus guttatus mgf019846m N 0.000
BGIOSIBCE013986 Oryza indica BGIOSIBCE013986 N 0.000
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.000
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.000
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.000
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.000
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.000
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.000
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.000
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.000
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.000
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.000
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.000
LOC_Os04g04000 Oryza sativa LOC_Os04g04000 N 0.000
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.000
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.000
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.000
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.000
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.000
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.000
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.000
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.000
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.000
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.000
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.000
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.000
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.000
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.000
ppa003664m Prunus persica ppa003664m N 0.000
ppa003557m Prunus persica ppa003557m N 0.000
ppa002588m Prunus persica ppa002588m N 0.000
ppa018635m Prunus persica ppa018635m N 0.000
ppa002483m Prunus persica ppa002483m N 0.000
29955.m001158 Ricinus communis 29955.m001158 N 0.000
29765.m000746 Ricinus communis 29765.m000746 N 0.000
29889.m003364 Ricinus communis 29889.m003364 N 0.000
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.000
SB06G027960 Sorghum bicolor Sb06g027960 N 0.000
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.000
SB03G031190 Sorghum bicolor Sb03g031190 N 0.000
SB01G008170 Sorghum bicolor Sb01g008170 N 0.000
SB09G000580 Sorghum bicolor Sb09g000580 N 0.000
SB07G006330 Sorghum bicolor Sb07g006330 N 0.000
SB07G024500 Sorghum bicolor Sb07g024500 N 0.000
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.000
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.000
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.000
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.000
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.000
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.000
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.000
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.000
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.000
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.000
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.000
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.000