CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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mgf013853m
(
Mimulus guttatus
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
mgf013853m
T62424_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
mgf013853m
YTH
495
585
LFFSVNTSGQFVGVAEMTGPVDFNKNVEYWQQDKWVGCFPVKWHIVKDLPNSLLKHITLENNENKPVTNSRDTQEVKLDQGLQVLKIFKDH
Links
Other
YTH
family RBPs
Other
Mimulus guttatus
RBPs
181 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AT1G11265
Arabidopsis thaliana
AT1G11265-TAIR-G
N
0.000
AT1G48710
Arabidopsis thaliana
AT1G48710-TAIR-G
N
0.000
AT1G58140
Arabidopsis thaliana
AT1G58140-TAIR-G
N
0.000
AT3G59720
Arabidopsis thaliana
AT3G59720-TAIR-G
N
0.000
AT3G61330
Arabidopsis thaliana
AT3G61330-TAIR-G
N
0.000
AT5G13205
Arabidopsis thaliana
AT5G13205-TAIR-G
N
0.000
fgenesh1_pg.C_scaffold_1682000001
Phytophthora ramorum
fgenesh1_pg.C_scaffold_1682000001
N
0.000
s_451916
Phytophthora sojae
s_451916
N
0.000
s_475569
Phytophthora sojae
s_475569
N
0.000