ENSCJAG00000000095 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000000095 T35456_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.915
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.915
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.915
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.894
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.752
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000000165 RRM 24 93
ENSCJAP00000000165 RRM 115 183

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

291 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA49741 Xenopus laevis AAA49741 I 0.830
AAA49742 Xenopus laevis AAA49742 I 0.830
AAA49949 Xenopus laevis AAA49949 I 0.801
AAA49950 Xenopus laevis AAA49950 I 0.790
AAH45260 Xenopus laevis AAH45260 I 0.844
AAH72090 Xenopus laevis AAH72090 I 0.837
AAI69881 Xenopus laevis AAI69881 I 0.790
Ame_R000626 Ailuropoda melanoleuca Ame_R000626 I 0.703
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.915
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.719
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.829
CBF67555 Xenopus laevis CBF67555 I 0.830
CBF67578 Xenopus laevis CBF67578 I 0.790
CBF67672 Xenopus laevis CBF67672 I 0.837
CBU92428 Xenopus laevis CBU92428 I 0.830
CBU92451 Xenopus laevis CBU92451 I 0.790
CBU92546 Xenopus laevis CBU92546 I 0.837
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.901
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.801
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.915
ROA2_BOVIN Bos taurus ENSBTAG00000005726 I 0.703
LOC781499 Bos taurus ENSBTAG00000021580 I 0.796
LOC785445 Bos taurus ENSBTAG00000025621 I 0.893
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.803
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.857
HNRNPA2B1 Canis familiaris ENSCAFG00000002885 I 0.703
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.817
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.817
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.887
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.824
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.843
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.865
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.915
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.857
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.879
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.864
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.818
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.901
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.845
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.796
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.850
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.838
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.850
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.782
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.810
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.831
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.825
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.824
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.887
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.843
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.845
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.850
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.894
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.908
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.872
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.730
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.843
LOC100401647 Callithrix jacchus ENSCJAG00000007908 I 0.703
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.754
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.894
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.872
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.879
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.892
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.886
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.821
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.915
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.915
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.850
ENSCJAG00000021872 Callithrix jacchus ENSCJAG00000021872 I 0.703
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.796
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.901
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.887
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.858
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.864
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.915
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.871
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.796
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.796
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.887
zgc:66127 Danio rerio ENSDARG00000011020 I 0.752
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.773
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.752
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.915
HNRNPA2B1 Dasypus novemcinctus ENSDNOG00000012928 I 0.703
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.796
Hnrnpa2b1 Dipodomys ordii ENSDORG00000005482 I 0.703
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.837
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.725
LOC100068539 Equus caballus ENSECAG00000000782 I 0.703
LOC100054206 Equus caballus ENSECAG00000006699 I 0.852
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.915
LOC100066794 Equus caballus ENSECAG00000023237 I 0.794
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.887
ENSEEUG00000000925 Erinaceus europaeus ENSEEUG00000000925 I 0.000
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.901
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.850
HNRNPA2B1 Echinops telfairi ENSETEG00000018577 I 0.703
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.915
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.794
HNRNPA2B1 Homo sapiens ENSG00000122566 D 0.703
HNRNPA1 Homo sapiens ENSG00000135486 D 0.915
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.894
HNRNPA3 Homo sapiens ENSG00000170144 I 0.796
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.915
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.741
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.830
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.794
Q5ZME1_CHICK Gallus gallus ENSGALG00000011036 I 0.703
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.915
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.796
HNRNPA2B1 Gorilla gorilla ENSGGOG00000017072 I 0.703
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.738
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.929
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.857
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.843
HNRNPA2B1 Loxodonta africana ENSLAFG00000006902 I 0.703
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.887
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.739
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.908
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.879
ENSMEUG00000001084 Macropus eugenii ENSMEUG00000001084 I 0.703
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.796
ENSMEUG00000014479 Macropus eugenii ENSMEUG00000014479 I 0.703
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.873
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.794
HNRNPA2B1 Meleagris gallopavo ENSMGAG00000010635 I 0.703
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.706
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.803
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.915
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.845
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.901
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.796
HNRNPA2B1 Myotis lucifugus ENSMLUG00000007578 I 0.703
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.796
HNRNPA2B1 Macaca mulatta ENSMMUG00000003619 I 0.703
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.857
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.915
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.894
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.915
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.803
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.829
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.908
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.908
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.845
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.886
HNRNPA2B1 Monodelphis domestica ENSMODG00000000603 I 0.703
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.796
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.810
Hnrnpa2b1 Mus musculus ENSMUSG00000004980 I 0.703
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.894
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.915
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.796
Gm8991 Mus musculus ENSMUSG00000059179 I 0.794
HNRNPA2B1 Ornithorhynchus anatinus ENSOANG00000009159 I 0.703
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.789
ENSOCUG00000006431 Oryctolagus cuniculus ENSOCUG00000006431 I 0.000
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.901
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.915
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.879
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.915
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.908
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.879
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.887
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.901
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.908
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.915
HNRNPA2B1 Oryctolagus cuniculus ENSOCUG00000026859 I 0.703
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.908
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.894
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.908
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.809
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.755
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.835
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.761
ENSPPYG00000001326 Pongo pygmaeus ENSPPYG00000001326 I 0.000
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.768
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.716
ENSPPYG00000017715 Pongo pygmaeus ENSPPYG00000017715 I 0.703
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.887
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.915
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.796
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.730
HNRNPA2B1 Pan troglodytes ENSPTRG00000019002 I 0.703
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.915
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.915
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.915
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.915
HNRNPA2B1 Pteropus vampyrus ENSPVAG00000006296 I 0.703
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.796
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.796
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.734
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.858
D4A8U2_RAT Rattus norvegicus ENSRNOG00000007252 I 0.000
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.857
Hnrnpa2b1 Rattus norvegicus ENSRNOG00000011175 I 0.703
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.746
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.836
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.858
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.857
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.796
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.739
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.879
ENSRNOG00000030250 Rattus norvegicus ENSRNOG00000030250 I 0.000
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.730
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.787
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.887
ENSRNOG00000033211 Rattus norvegicus ENSRNOG00000033211 I 0.000
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.915
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.787
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.879
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.739
ENSRNOG00000042377 Rattus norvegicus ENSRNOG00000042377 I 0.000
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.745
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.837
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.915
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.796
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.739
ENSSTOG00000006202 Spermophilus tridecemlineatus ENSSTOG00000006202 I 0.703
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.843
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.915
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.871
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.900
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.710
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.794
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.773
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.723
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.780
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.720
HNRNPA2B1 Tursiops truncatus ENSTTRG00000000709 I 0.703
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.915
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.796
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.809
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.844
P17130 Xenopus laevis P17130 I 0.830
P51968 Xenopus laevis P51968 I 0.801
P51992 Xenopus laevis P51992 I 0.790