CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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B9HII9_POPTR
(
Populus trichocarpa
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
POPTR_0008s09960
T62248_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0008s09960.1
YTH
390
480
LFFSVNASGQFCGVAEMVGPVDFNRDMDFWQQDKWSGSFLVKWHIIKDIPNSSFRHIILENNENKPVTNSRDTQEIMYKQGLEMLKMFKNH
Links
Other
YTH
family RBPs
Other
Populus trichocarpa
RBPs
181 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
76581
Helobdella robusta
76581
I
0.000
estExt_fgenesh2_pg.C_360096
Branchiostoma floridae
estExt_fgenesh2_pg.C_360096
I
0.000
estExt_fgenesh2_pg.C_7640002
Branchiostoma floridae
estExt_fgenesh2_pg.C_7640002
I
0.000
XP_001184429.1
Strongylocentrotus purpuratus
XP_001184429.1
N
0.000
XP_001191950.1
Strongylocentrotus purpuratus
XP_001191950.1
N
0.000
XP_784687.2
Strongylocentrotus purpuratus
XP_784687.2
N
0.000