B9HII9_POPTR (Populus trichocarpa)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 POPTR_0008s09960 T62248_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0008s09960.1 YTH 390 480

Links

Other YTH family RBPs
Other Populus trichocarpa RBPs

181 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
mgf019821m Mimulus guttatus mgf019821m N 0.769
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.901
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.758
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.857
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.857
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.780
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.769
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.879
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.780
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.758
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.769
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.758
mgf017987m Mimulus guttatus mgf017987m N 0.868
mgf015583m Mimulus guttatus mgf015583m N 0.879
mgf014829m Mimulus guttatus mgf014829m N 0.736
mgf014143m Mimulus guttatus mgf014143m N 0.879
mgf013935m Mimulus guttatus mgf013935m N 0.725
mgf013853m Mimulus guttatus mgf013853m N 0.725
mgf009938m Mimulus guttatus mgf009938m N 0.725
mgf001716m Mimulus guttatus mgf001716m N 0.736
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.714
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.868
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.758
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.923
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.714
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.714
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.703
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.703
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.703
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.703
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.769
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.769
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.769
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.714
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.714
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.923
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.714
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.714
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.714
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.714
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.714
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.714
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.714
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.714
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.791
ppa018635m Prunus persica ppa018635m N 0.912
MDP0000488588 Malus x domestica MDP0000488588 N 0.725
MDP0000488248 Malus x domestica MDP0000488248 N 0.747
MDP0000405927 Malus x domestica MDP0000405927 N 0.769
MDP0000306387 Malus x domestica MDP0000306387 N 0.879
MDP0000287088 Malus x domestica MDP0000287088 N 0.769
MDP0000286471 Malus x domestica MDP0000286471 N 0.791
MDP0000256033 Malus x domestica MDP0000256033 N 0.769
MDP0000248088 Malus x domestica MDP0000248088 N 0.758
MDP0000231231 Malus x domestica MDP0000231231 N 0.791
MDP0000552419 Malus x domestica MDP0000552419 N 0.758
MDP0000617859 Malus x domestica MDP0000617859 N 0.769
ppa003664m Prunus persica ppa003664m N 0.802
ppa003557m Prunus persica ppa003557m N 0.747
ppa002677m Prunus persica ppa002677m N 0.725
ppa002588m Prunus persica ppa002588m N 0.769
ppa002483m Prunus persica ppa002483m N 0.769
PDK_20s1906441g001 Phoenix dactylifera PDK_20s1906441g001 N 0.747
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.747
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.835
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.725
MDP0000199885 Malus x domestica MDP0000199885 N 0.747
MDP0000171737 Malus x domestica MDP0000171737 N 0.802
MDP0000132385 Malus x domestica MDP0000132385 N 0.879
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.769
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.736
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.703
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.824
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.703
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.824
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.703
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.736
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.758
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.703
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.879
MDP0000124048 Malus x domestica MDP0000124048 N 0.725
LjT10H22.120.nd Lotus japonicus LjT10H22.120.nd N 0.736
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.769
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.747
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.890
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.769
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.890
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.780
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.791
mgf019846m Mimulus guttatus mgf019846m N 0.725
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.791
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.758
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.703
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.703
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.714
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.736
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.747
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.714
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.824
BRADI2G12380 Brachypodium distachyon BRADI2G12380 N 0.725
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.714
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.703
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.846
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.703
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.758
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.890
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.736
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.714
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.703
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.714
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.791
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.747
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.824
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.725
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.747
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.747
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.703
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.846
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.857
PK26094.1 Cannabis sativa PK26094.1 N 0.747
PK23104.1 Cannabis sativa PK23104.1 N 0.780
PK17832.1 Cannabis sativa PK17832.1 N 0.769
PK05579.1 Cannabis sativa PK05579.1 N 0.747
PK02315.1 Cannabis sativa PK02315.1 N 0.868
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.714
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.791
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.758
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.736
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.736
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.835
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.824
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.714
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.703
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.846
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.714
PK01736.1 Cannabis sativa PK01736.1 N 0.725
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.758
29890.m000285 Ricinus communis 29890.m000285 N 0.747
29889.m003364 Ricinus communis 29889.m003364 N 0.901
29765.m000746 Ricinus communis 29765.m000746 N 0.736
SB09G004590 Sorghum bicolor Sb09g004590 N 0.703
SB07G024500 Sorghum bicolor Sb07g024500 N 0.769
SB07G006330 Sorghum bicolor Sb07g006330 N 0.769
SB06G027960 Sorghum bicolor Sb06g027960 N 0.725
SB03G031190 Sorghum bicolor Sb03g031190 N 0.824
SB02G003990 Sorghum bicolor Sb02g003990 N 0.703
29929.m004643 Ricinus communis 29929.m004643 N 0.758
29950.m001140 Ricinus communis 29950.m001140 N 0.703
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.758
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.758
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.758
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.714
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.714
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.714
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.714
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.758
29955.m001158 Ricinus communis 29955.m001158 N 0.791
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.736
SB01G008170 Sorghum bicolor Sb01g008170 N 0.703
SB01G005500 Sorghum bicolor Sb01g005500 N 0.725
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.758
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.736
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.780
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.703
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.835
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.824
LOC_Os01g22630 Oryza sativa LOC_Os01g22630 N 0.703
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.769
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.747
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.747
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.780
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.714
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.725
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.769
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.780
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.956
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.780
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.758
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.714
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.703
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.747