29889.m003364 (Ricinus communis)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 29889.m003364 T62291_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
29889.m003364 YTH 430 520

Links

Other YTH family RBPs
Other Ricinus communis RBPs

162 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
mgf001716m Mimulus guttatus mgf001716m N 0.769
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.901
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.780
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.000
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.000
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.758
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.714
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.846
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.769
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.934
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.000
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.769
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.714
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.747
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.000
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.901
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.000
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.769
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.857
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.846
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.780
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.934
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.000
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.000
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.000
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.000
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.714
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.714
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.714
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.769
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.769
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.769
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.714
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.000
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.000
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.000
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.000
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.000
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.000
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.000
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.000
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.000
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.000
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.000
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.714
ppa018635m Prunus persica ppa018635m N 0.901
MDP0000306387 Malus x domestica MDP0000306387 N 0.868
MDP0000287088 Malus x domestica MDP0000287088 N 0.791
MDP0000286471 Malus x domestica MDP0000286471 N 0.813
MDP0000248088 Malus x domestica MDP0000248088 N 0.780
MDP0000231231 Malus x domestica MDP0000231231 N 0.813
MDP0000171737 Malus x domestica MDP0000171737 N 0.802
MDP0000132385 Malus x domestica MDP0000132385 N 0.868
MDP0000129009 Malus x domestica MDP0000129009 N 0.000
MDP0000124048 Malus x domestica MDP0000124048 N 0.714
MDP0000405927 Malus x domestica MDP0000405927 N 0.791
MDP0000488588 Malus x domestica MDP0000488588 N 0.725
ppa003664m Prunus persica ppa003664m N 0.824
ppa002588m Prunus persica ppa002588m N 0.769
ppa002483m Prunus persica ppa002483m N 0.769
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.736
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.000
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.703
MDP0000718677 Malus x domestica MDP0000718677 N 0.000
MDP0000617859 Malus x domestica MDP0000617859 N 0.791
MDP0000552419 Malus x domestica MDP0000552419 N 0.780
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.879
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.769
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.868
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.703
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.747
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.780
mgf019821m Mimulus guttatus mgf019821m N 0.802
mgf017987m Mimulus guttatus mgf017987m N 0.857
mgf015583m Mimulus guttatus mgf015583m N 0.868
mgf014829m Mimulus guttatus mgf014829m N 0.769
mgf014143m Mimulus guttatus mgf014143m N 0.868
mgf013935m Mimulus guttatus mgf013935m N 0.703
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.791
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.714
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.000
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.000
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.000
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.780
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.000
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.901
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.780
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.747
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.791
mgf009938m Mimulus guttatus mgf009938m N 0.714
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.714
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.747
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.000
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.000
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.747
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.758
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.703
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.802
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.714
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.813
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.000
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.703
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.846
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.758
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.703
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.736
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.912
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.000
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.000
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.714
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.791
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.769
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.769
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.780
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.000
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.780
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.703
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.846
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.846
PK26094.1 Cannabis sativa PK26094.1 N 0.736
PK23716.1 Cannabis sativa PK23716.1 N 0.000
PK23104.1 Cannabis sativa PK23104.1 N 0.780
PK17832.1 Cannabis sativa PK17832.1 N 0.769
PK05579.1 Cannabis sativa PK05579.1 N 0.747
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.000
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.791
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.725
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.758
BGIOSIBCE012954 Oryza indica BGIOSIBCE012954 N 0.000
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.824
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.703
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.802
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.000
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.835
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.714
PK02315.1 Cannabis sativa PK02315.1 N 0.846
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.802
SB09G000580 Sorghum bicolor Sb09g000580 N 0.703
SB07G024500 Sorghum bicolor Sb07g024500 N 0.791
SB07G006330 Sorghum bicolor Sb07g006330 N 0.780
SB06G027960 Sorghum bicolor Sb06g027960 N 0.736
SB03G031190 Sorghum bicolor Sb03g031190 N 0.791
SB02G003990 Sorghum bicolor Sb02g003990 N 0.714
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.747
SB01G008170 Sorghum bicolor Sb01g008170 N 0.703
29890.m000285 Ricinus communis 29890.m000285 N 0.747
29929.m004643 Ricinus communis 29929.m004643 N 0.758
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.802
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.000
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.000
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.000
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.000
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.758
30169.m006347 Ricinus communis 30169.m006347 N 0.000
29955.m001158 Ricinus communis 29955.m001158 N 0.824
29950.m001140 Ricinus communis 29950.m001140 N 0.000
SB01G005500 Sorghum bicolor Sb01g005500 N 0.703
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.000
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.725
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.780
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.000
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.725
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.802
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.703
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.824
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.703
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.802
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.791
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.769
B9GLB9_POPTR Populus trichocarpa POPTR_0001s03940 N 0.000
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.769
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.769
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.901
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.901
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.780
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.769
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.714
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.000
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.780
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.725