GRMZM2G126338 (Zea mays)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 GRMZM2G126338 T62439_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G126338_P01 YTH 486 576
GRMZM2G126338_P02 YTH 487 577

Links

Other YTH family RBPs
Other Zea mays RBPs

184 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.736
mgf013853m Mimulus guttatus mgf013853m N 0.846
mgf014143m Mimulus guttatus mgf014143m N 0.000
mgf014829m Mimulus guttatus mgf014829m N 0.703
mgf015583m Mimulus guttatus mgf015583m N 0.000
mgf017987m Mimulus guttatus mgf017987m N 0.000
mgf019821m Mimulus guttatus mgf019821m N 0.714
mgf019846m Mimulus guttatus mgf019846m N 0.736
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.802
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.835
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.714
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.725
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.835
mgf009938m Mimulus guttatus mgf009938m N 0.846
mgf001716m Mimulus guttatus mgf001716m N 0.703
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.725
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.758
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.747
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.736
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.758
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.703
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.714
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.769
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.736
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.703
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.714
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.725
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.000
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.802
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.725
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.703
MDP0000306387 Malus x domestica MDP0000306387 N 0.725
MDP0000405927 Malus x domestica MDP0000405927 N 0.758
MDP0000552419 Malus x domestica MDP0000552419 N 0.747
MDP0000617859 Malus x domestica MDP0000617859 N 0.758
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.890
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.000
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.703
PDK_20s1906441g001 Phoenix dactylifera PDK_20s1906441g001 N 0.000
ppa002483m Prunus persica ppa002483m N 0.758
ppa002588m Prunus persica ppa002588m N 0.758
ppa002677m Prunus persica ppa002677m N 0.000
ppa003664m Prunus persica ppa003664m N 0.747
MDP0000287088 Malus x domestica MDP0000287088 N 0.758
MDP0000286471 Malus x domestica MDP0000286471 N 0.725
MDP0000256033 Malus x domestica MDP0000256033 N 0.000
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.758
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.714
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.747
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.725
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.000
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.703
LjT10H22.120.nd Lotus japonicus LjT10H22.120.nd N 0.000
MDP0000132385 Malus x domestica MDP0000132385 N 0.725
MDP0000171737 Malus x domestica MDP0000171737 N 0.736
MDP0000199885 Malus x domestica MDP0000199885 N 0.000
MDP0000231231 Malus x domestica MDP0000231231 N 0.725
MDP0000248088 Malus x domestica MDP0000248088 N 0.747
ppa018635m Prunus persica ppa018635m N 0.725
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.736
PK01736.1 Cannabis sativa PK01736.1 N 0.714
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.736
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.813
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.791
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.714
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.714
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.780
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.835
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.736
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.736
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.769
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.725
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.725
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.703
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.802
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.813
PK02315.1 Cannabis sativa PK02315.1 N 0.000
PK05579.1 Cannabis sativa PK05579.1 N 0.747
PK17832.1 Cannabis sativa PK17832.1 N 0.780
PK23104.1 Cannabis sativa PK23104.1 N 0.703
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.714
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.714
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.780
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.835
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.703
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.736
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.703
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.725
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.736
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.703
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.769
29890.m000285 Ricinus communis 29890.m000285 N 0.736
29929.m004643 Ricinus communis 29929.m004643 N 0.758
29955.m001158 Ricinus communis 29955.m001158 N 0.714
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.758
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.000
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.000
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.000
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.000
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.736
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.736
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.791
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.791
29889.m003364 Ricinus communis 29889.m003364 N 0.703
SB07G024500 Sorghum bicolor Sb07g024500 N 0.813
SB07G006330 Sorghum bicolor Sb07g006330 N 0.813
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.813
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.802
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.758
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.769
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.725
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.703
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.000
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.703
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.780
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.835
SB03G031190 Sorghum bicolor Sb03g031190 N 0.725
SB06G027960 Sorghum bicolor Sb06g027960 N 0.791
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.791