CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSMMUG00000031948
(
Macaca mulatta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMMUG00000031948
T39020_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA1
M312_0.6
Homo sapiens
Sequence logo not available
UAGGGW
RIP-chip
Cook et al.(2011)
560_17925491
0.922
HNRNPA1
M271_0.6
Homo sapiens
UAGGGW
SELEX
Cook et al.(2011)
23_7510636
0.922
HNRNPA1
M022_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00022
0.922
HNRNPA1L2
M023_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00023
0.901
HNRNPA2B1
M024_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00024
0.738
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMMUP00000004970
RRM
16
84
LFIGGSFETTDESLRSHFEQWGTLTDCVVMRDPNTKHSKDFGFVTYATVEEVDAAMNARPHKVDGRVVE
ENSMMUP00000004970
RRM
104
173
IFIGDIKEDTEEHHLRDYFEQCGKTEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYDTVNGHNCE
ENSMMUP00000008838
RRM
16
84
LFIGGSFETTDESLRSHFEQWGTLTDCVVMRDPNTKHSKDFGFVTYATVEEVDAAMNARPHKVDGRVVE
ENSMMUP00000008838
RRM
104
173
IFIGDIKEDTEEHHLRDYFEQCGKTEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYDTVNGHNCE
Links
Other
RRM
family RBPs
Other
Macaca mulatta
RBPs
263 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R018030
Ailuropoda melanoleuca
Ame_R018030
I
0.857
Ame_R011792
Ailuropoda melanoleuca
Ame_R011792
I
0.922
ENSACAG00000007169
Anolis carolinensis
ENSACAG00000007169
I
0.908
HNRNPA3
Anolis carolinensis
ENSACAG00000012234
I
0.801
LOC781499
Bos taurus
ENSBTAG00000021580
I
0.796
LOC785445
Bos taurus
ENSBTAG00000025621
I
0.893
ROA1_BOVIN
Bos taurus
ENSBTAG00000001553
I
0.922
ENSCJAG00000010169
Callithrix jacchus
ENSCJAG00000010169
I
0.886
ENSCJAG00000009723
Callithrix jacchus
ENSCJAG00000009723
I
0.865
LOC100413454
Callithrix jacchus
ENSCJAG00000009030
I
0.901
ENSCJAG00000035202
Callithrix jacchus
ENSCJAG00000035202
I
0.871
ENSCJAG00000000095
Callithrix jacchus
ENSCJAG00000000095
I
0.886
ENSCJAG00000001353
Callithrix jacchus
ENSCJAG00000001353
I
0.852
LOC100409067
Callithrix jacchus
ENSCJAG00000003245
I
0.901
LOC100397230
Callithrix jacchus
ENSCJAG00000004031
I
0.915
ENSCJAG00000004902
Callithrix jacchus
ENSCJAG00000004902
I
0.872
ENSCJAG00000006928
Callithrix jacchus
ENSCJAG00000006928
I
0.716
ENSCJAG00000007250
Callithrix jacchus
ENSCJAG00000007250
I
0.843
LOC100397230
Callithrix jacchus
ENSCJAG00000014791
I
0.879
ENSCJAG00000016375
Callithrix jacchus
ENSCJAG00000016375
I
0.886
ENSCJAG00000033784
Callithrix jacchus
ENSCJAG00000033784
I
0.864
ENSCJAG00000032417
Callithrix jacchus
ENSCJAG00000032417
I
0.858
ENSCJAG00000033856
Callithrix jacchus
ENSCJAG00000033856
I
0.922
ENSCJAG00000031552
Callithrix jacchus
ENSCJAG00000031552
I
0.894
LOC100410389
Callithrix jacchus
ENSCJAG00000023392
I
0.894
LOC100411573
Callithrix jacchus
ENSCJAG00000023383
I
0.796
ENSCJAG00000020672
Callithrix jacchus
ENSCJAG00000020672
I
0.864
ENSCJAG00000019479
Callithrix jacchus
ENSCJAG00000019479
I
0.922
LOC100397230
Callithrix jacchus
ENSCJAG00000018864
I
0.922
ENSCJAG00000008584
Callithrix jacchus
ENSCJAG00000008584
I
0.754
ENSCAFG00000006784
Canis familiaris
ENSCAFG00000006784
I
0.894
ENSCAFG00000025274
Canis familiaris
ENSCAFG00000025274
I
0.843
XM_852631.1
Canis familiaris
ENSCAFG00000023680
I
0.894
ENSCAFG00000002059
Canis familiaris
ENSCAFG00000002059
I
0.864
ENSCAFG00000004202
Canis familiaris
ENSCAFG00000004202
I
0.817
XM_854536.1
Canis familiaris
ENSCAFG00000005046
I
0.879
XM_855847.1
Canis familiaris
ENSCAFG00000006327
I
0.865
XM_534786.2
Canis familiaris
ENSCAFG00000006580
I
0.922
XP_541811.1
Canis familiaris
ENSCAFG00000006586
I
0.864
ENSCAFG00000007198
Canis familiaris
ENSCAFG00000007198
I
0.850
ENSCAFG00000007879
Canis familiaris
ENSCAFG00000007879
I
0.832
ENSCAFG00000010153
Canis familiaris
ENSCAFG00000010153
I
0.908
ENSCAFG00000020238
Canis familiaris
ENSCAFG00000020238
I
0.824
ENSCAFG00000019104
Canis familiaris
ENSCAFG00000019104
I
0.817
HNRNPA3
Canis familiaris
ENSCAFG00000015889
I
0.000
ENSCAFG00000015319
Canis familiaris
ENSCAFG00000015319
I
0.831
ENSCAFG00000013497
Canis familiaris
ENSCAFG00000013497
I
0.796
ENSCAFG00000011035
Canis familiaris
ENSCAFG00000011035
I
0.852
ENSCAFG00000019118
Canis familiaris
ENSCAFG00000019118
I
0.839
ENSCPOG00000004251
Cavia porcellus
ENSCPOG00000004251
I
0.796
HNRNPA3
Cavia porcellus
ENSCPOG00000011301
I
0.796
ENSCPOG00000021077
Cavia porcellus
ENSCPOG00000021077
I
0.894
hnrnpa3
Danio rerio
ENSDARG00000059351
I
0.745
hnrnpa1
Danio rerio
ENSDARG00000036675
I
0.780
ENSDNOG00000009228
Dasypus novemcinctus
ENSDNOG00000009228
I
0.922
HNRNPA3
Dasypus novemcinctus
ENSDNOG00000019022
I
0.796
Hnrnpa1
Dipodomys ordii
ENSDORG00000010628
I
0.837
ENSDORG00000011155
Dipodomys ordii
ENSDORG00000011155
I
0.718
ENSETEG00000015332
Echinops telfairi
ENSETEG00000015332
I
0.850
LOC100066794
Equus caballus
ENSECAG00000023237
I
0.794
LOC100054206
Equus caballus
ENSECAG00000006699
I
0.845
Q6DTK6_HORSE
Equus caballus
ENSECAG00000008676
I
0.922
ENSEEUG00000000494
Erinaceus europaeus
ENSEEUG00000000494
I
0.887
ENSEEUG00000006130
Erinaceus europaeus
ENSEEUG00000006130
I
0.908
ENSFCAG00000010150
Felis catus
ENSFCAG00000010150
I
0.922
HNRNPA3
Felis catus
ENSFCAG00000012146
I
0.794
HNRPA3
Gallus gallus
ENSGALG00000009250
I
0.794
HNRNPA3
Gasterosteus aculeatus
ENSGACG00000004477
I
0.741
ENSGACG00000009435
Gasterosteus aculeatus
ENSGACG00000009435
I
0.837
ENSGGOG00000025381
Gorilla gorilla
ENSGGOG00000025381
I
0.908
ENSGGOG00000025827
Gorilla gorilla
ENSGGOG00000025827
I
0.871
ENSGGOG00000025446
Gorilla gorilla
ENSGGOG00000025446
I
0.730
ENSGGOG00000022020
Gorilla gorilla
ENSGGOG00000022020
I
0.745
HNRNPA3
Gorilla gorilla
ENSGGOG00000006130
I
0.796
HNRNPA1
Gorilla gorilla
ENSGGOG00000003040
I
0.922
HNRNPA1
Homo sapiens
ENSG00000135486
D
0.922
HNRNPA1L2
Homo sapiens
ENSG00000139675
D
0.901
HNRNPA3
Homo sapiens
ENSG00000170144
I
0.796
ENSG00000215492
Homo sapiens
ENSG00000215492
I
0.922
ENSLAFG00000026657
Loxodonta africana
ENSLAFG00000026657
I
0.894
HNRNPA3
Loxodonta africana
ENSLAFG00000027712
I
0.732
ENSLAFG00000029587
Loxodonta africana
ENSLAFG00000029587
I
0.915
ENSLAFG00000030769
Loxodonta africana
ENSLAFG00000030769
I
0.879
LOC710473
Macaca mulatta
ENSMMUG00000007887
I
0.915
LOC710473
Macaca mulatta
ENSMMUG00000007928
I
0.901
LOC710473
Macaca mulatta
ENSMMUG00000012989
I
0.922
LOC710473
Macaca mulatta
ENSMMUG00000029402
I
0.915
ROA1_MACMU
Macaca mulatta
ENSMMUG00000031613
I
0.901
ENSMMUG00000007695
Macaca mulatta
ENSMMUG00000007695
I
0.864
ENSMMUG00000001858
Macaca mulatta
ENSMMUG00000001858
I
0.796
HNRNPA3
Macropus eugenii
ENSMEUG00000013622
I
0.796
ENSMGAG00000007630
Meleagris gallopavo
ENSMGAG00000007630
I
0.880
HNRNPA3
Meleagris gallopavo
ENSMGAG00000009565
I
0.794
HNRNPA3
Microcebus murinus
ENSMICG00000005513
I
0.706
HNRNPA3
Monodelphis domestica
ENSMODG00000019803
I
0.796
ENSMODG00000023422
Monodelphis domestica
ENSMODG00000023422
I
0.810
Hnrnpa3
Mus musculus
ENSMUSG00000059005
I
0.796
Gm8991
Mus musculus
ENSMUSG00000059179
I
0.794
Hnrnpa1
Mus musculus
ENSMUSG00000046434
I
0.922
ENSMUSG00000021927
Mus musculus
ENSMUSG00000021927
I
0.901
ENSMLUG00000000648
Myotis lucifugus
ENSMLUG00000000648
I
0.922
ENSMLUG00000000788
Myotis lucifugus
ENSMLUG00000000788
I
0.845
ENSMLUG00000003232
Myotis lucifugus
ENSMLUG00000003232
I
0.908
HNRNPA3
Myotis lucifugus
ENSMLUG00000003906
I
0.796
ENSOPRG00000006107
Ochotona princeps
ENSOPRG00000006107
I
0.915
ENSOCUG00000028124
Oryctolagus cuniculus
ENSOCUG00000028124
I
0.915
ENSOCUG00000023674
Oryctolagus cuniculus
ENSOCUG00000023674
I
0.922
ENSOCUG00000023444
Oryctolagus cuniculus
ENSOCUG00000023444
I
0.915
ENSOCUG00000023322
Oryctolagus cuniculus
ENSOCUG00000023322
I
0.908
ENSOCUG00000022668
Oryctolagus cuniculus
ENSOCUG00000022668
I
0.894
ENSOCUG00000022627
Oryctolagus cuniculus
ENSOCUG00000022627
I
0.893
ENSOCUG00000022568
Oryctolagus cuniculus
ENSOCUG00000022568
I
0.915
ENSOCUG00000021007
Oryctolagus cuniculus
ENSOCUG00000021007
I
0.908
ENSOCUG00000021006
Oryctolagus cuniculus
ENSOCUG00000021006
I
0.887
ENSOCUG00000013350
Oryctolagus cuniculus
ENSOCUG00000013350
I
0.922
ENSOCUG00000006431
Oryctolagus cuniculus
ENSOCUG00000006431
I
0.000
ENSOCUG00000010985
Oryctolagus cuniculus
ENSOCUG00000010985
I
0.908
HNRNPA3
Oryctolagus cuniculus
ENSOCUG00000002743
I
0.789
HNRNPA3
Oryzias latipes
ENSORLG00000017561
I
0.734
ENSORLG00000008001
Oryzias latipes
ENSORLG00000008001
I
0.823
ENSOGAG00000009945
Otolemur garnettii
ENSOGAG00000009945
I
0.901
HNRNPA1L2
Pan troglodytes
ENSPTRG00000032520
I
0.922
ROA1_PANTR
Pan troglodytes
ENSPTRG00000031363
I
0.922
ROA1_PANTR
Pan troglodytes
ENSPTRG00000028756
I
0.922
ENSPTRG00000018253
Pan troglodytes
ENSPTRG00000018253
I
0.723
HNRNPA3
Pan troglodytes
ENSPTRG00000012676
I
0.796
ROA1_PANTR
Pan troglodytes
ENSPTRG00000005035
I
0.922
ENSPPYG00000001012
Pongo pygmaeus
ENSPPYG00000001012
I
0.761
ENSPPYG00000001326
Pongo pygmaeus
ENSPPYG00000001326
I
0.000
ENSPPYG00000012967
Pongo pygmaeus
ENSPPYG00000012967
I
0.761
ENSPPYG00000016683
Pongo pygmaeus
ENSPPYG00000016683
I
0.709
ENSPPYG00000017853
Pongo pygmaeus
ENSPPYG00000017853
I
0.879
ENSPVAG00000000322
Pteropus vampyrus
ENSPVAG00000000322
I
0.922
HNRNPA3
Pteropus vampyrus
ENSPVAG00000010380
I
0.796
ENSRNOG00000030901
Rattus norvegicus
ENSRNOG00000030901
I
0.745
D3ZTB7_RAT
Rattus norvegicus
ENSRNOG00000031608
I
0.773
ENSRNOG00000033182
Rattus norvegicus
ENSRNOG00000033182
I
0.887
ENSRNOG00000033211
Rattus norvegicus
ENSRNOG00000033211
I
0.000
Hnrnpa1
Rattus norvegicus
ENSRNOG00000036839
I
0.922
D3ZXA3_RAT
Rattus norvegicus
ENSRNOG00000038905
I
0.787
ENSRNOG00000039436
Rattus norvegicus
ENSRNOG00000039436
I
0.908
ENSRNOG00000042377
Rattus norvegicus
ENSRNOG00000042377
I
0.000
ENSRNOG00000030250
Rattus norvegicus
ENSRNOG00000030250
I
0.000
D4A491_RAT
Rattus norvegicus
ENSRNOG00000029531
I
0.901
D3ZX95_RAT
Rattus norvegicus
ENSRNOG00000027006
I
0.732
D3ZNE1_RAT
Rattus norvegicus
ENSRNOG00000005671
I
0.734
ENSRNOG00000005951
Rattus norvegicus
ENSRNOG00000005951
I
0.872
D4A8U2_RAT
Rattus norvegicus
ENSRNOG00000007252
I
0.000
ENSRNOG00000011100
Rattus norvegicus
ENSRNOG00000011100
I
0.857
ENSRNOG00000013650
Rattus norvegicus
ENSRNOG00000013650
I
0.739
ENSRNOG00000021280
Rattus norvegicus
ENSRNOG00000021280
I
0.850
D4A2D2_RAT
Rattus norvegicus
ENSRNOG00000021986
I
0.865
D4AD23_RAT
Rattus norvegicus
ENSRNOG00000025891
I
0.886
ROA3_RAT
Rattus norvegicus
ENSRNOG00000027001
I
0.796
LOC100360986
Rattus norvegicus
ENSRNOG00000001556
I
0.796
ENSSARG00000008946
Sorex araneus
ENSSARG00000008946
I
0.837
HNRNPA3
Sorex araneus
ENSSARG00000007605
I
0.766
ENSSTOG00000015259
Spermophilus tridecemlineatus
ENSSTOG00000015259
I
0.871
ENSSSCG00000000288
Sus scrofa
ENSSSCG00000000288
I
0.922
HNRNPA3
Sus scrofa
ENSSSCG00000015988
I
0.796
ENSSSCG00000015989
Sus scrofa
ENSSSCG00000015989
I
0.732
HNRNPA3
Taeniopygia guttata
ENSTGUG00000008996
I
0.794
Q1KKS6_FUGRU
Takifugu rubripes
ENSTRUG00000017504
I
0.713
Q1KKU4_FUGRU
Takifugu rubripes
ENSTRUG00000002190
I
0.794
HNRNPA3
Tetraodon nigroviridis
ENSTNIG00000016958
I
0.716
ENSTNIG00000015047
Tetraodon nigroviridis
ENSTNIG00000015047
I
0.780
ENSTBEG00000008238
Tupaia belangeri
ENSTBEG00000008238
I
0.922
ENSTBEG00000016272
Tupaia belangeri
ENSTBEG00000016272
I
0.929
ENSTBEG00000012511
Tupaia belangeri
ENSTBEG00000012511
I
0.871
HNRNPA3
Tursiops truncatus
ENSTTRG00000014225
I
0.796
ENSTTRG00000004505
Tursiops truncatus
ENSTTRG00000004505
I
0.922
CBF67578
Xenopus laevis
CBF67578
I
0.783
CBF67672
Xenopus laevis
CBF67672
I
0.844
CBU92428
Xenopus laevis
CBU92428
I
0.830
CBU92451
Xenopus laevis
CBU92451
I
0.783
CBU92546
Xenopus laevis
CBU92546
I
0.844
P17130
Xenopus laevis
P17130
I
0.830
P51968
Xenopus laevis
P51968
I
0.794
CBF67555
Xenopus laevis
CBF67555
I
0.830
AAI69881
Xenopus laevis
AAI69881
I
0.783
AAH72090
Xenopus laevis
AAH72090
I
0.844
AAH45260
Xenopus laevis
AAH45260
I
0.844
AAA49950
Xenopus laevis
AAA49950
I
0.783
AAA49949
Xenopus laevis
AAA49949
I
0.794
AAA49742
Xenopus laevis
AAA49742
I
0.830
AAA49741
Xenopus laevis
AAA49741
I
0.830
P51992
Xenopus laevis
P51992
I
0.783
hnrnpa1
Xenopus tropicalis
ENSXETG00000021277
I
0.851
hnrnpa3
Xenopus tropicalis
ENSXETG00000001806
I
0.801