CBF67672 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CBF67672 T59699_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.921
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.921
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.921
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.900
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.800
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CBF67672 RRM 16 85
CBF67672 RRM 107 176

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

301 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
2217_YCL059C Saccharomyces paradoxus 2217_YCL059C N 0.000
2245_YCL059C Saccharomyces mikatae 2245_YCL059C N 0.000
2380_YCL059C Saccharomyces bayanus 2380_YCL059C N 0.000
AMAG_07778 Allomyces macrogynus AMAG_07778 N 0.000
AMAG_09721 Allomyces macrogynus AMAG_09721 N 0.000
Ame_R008803 Ailuropoda melanoleuca Ame_R008803 N 0.000
ATEG_01441 Aspergillus terreus CADATEAG00000360 N 0.000
CMR456C Cyanidioschyzon merolae CMR456C N 0.000
CNBG_5932 Cryptococcus neoformans CNBG_5932 N 0.000
DEHA0E14685g Debaryomyces hansenii DEHA0E14685g N 0.000
KRR1_BOVIN Bos taurus ENSBTAG00000011591 N 0.000
XM_846783.1 Canis familiaris ENSCAFG00000005665 N 0.000
KRR1 Choloepus hoffmanni ENSCHOG00000009636 N 0.000
LOC100407700 Callithrix jacchus ENSCJAG00000001181 N 0.000
KRR1 Cavia porcellus ENSCPOG00000014353 N 0.000
KRR1 Danio rerio ENSDARG00000011246 N 0.000
KRR1 Dasypus novemcinctus ENSDNOG00000015614 N 0.000
Krr1 Dipodomys ordii ENSDORG00000004614 N 0.000
LOC100050169 Equus caballus ENSECAG00000017498 N 0.000
KRR1 Erinaceus europaeus ENSEEUG00000001466 N 0.000
KRR1 Felis catus ENSFCAG00000005207 N 0.000
KRR1 Homo sapiens ENSG00000111615 N 0.000
KRR1 Gasterosteus aculeatus ENSGACG00000019481 N 0.000
Q5ZKE0_CHICK Gallus gallus ENSGALG00000010227 N 0.000
KRR1 Gorilla gorilla ENSGGOG00000013596 N 0.000
KRR1 Loxodonta africana ENSLAFG00000015986 N 0.000
KRR1 Macropus eugenii ENSMEUG00000011365 N 0.000
KRR1 Meleagris gallopavo ENSMGAG00000010844 N 0.000
KRR1 Macaca mulatta ENSMMUG00000009640 N 0.000
KRR1 Monodelphis domestica ENSMODG00000020451 N 0.000
Krr1 Mus musculus ENSMUSG00000063334 N 0.000
KRR1 Oryctolagus cuniculus ENSOCUG00000003925 N 0.000
KRR1 Otolemur garnettii ENSOGAG00000010313 N 0.000
KRR1 Ochotona princeps ENSOPRG00000011858 N 0.000
ENSPPYG00000004785 Pongo pygmaeus ENSPPYG00000004785 N 0.000
XR_025480.1 Pan troglodytes ENSPTRG00000005238 N 0.000
KRR1 Pteropus vampyrus ENSPVAG00000000529 N 0.000
Hrb2 Rattus norvegicus ENSRNOG00000004035 N 0.000
KRR1 Sorex araneus ENSSARG00000009967 N 0.000
KRR1 Sus scrofa ENSSSCG00000000520 N 0.000
KRR1 Spermophilus tridecemlineatus ENSSTOG00000003620 N 0.000
KRR1 Tupaia belangeri ENSTBEG00000008145 N 0.000
KRR1 Takifugu rubripes ENSTRUG00000004380 N 0.000
KRR1 Tarsius syrichta ENSTSYG00000009394 N 0.000
KRR1 Tursiops truncatus ENSTTRG00000001661 N 0.000
krr1 Xenopus tropicalis ENSXETG00000013312 N 0.000
estExt_fgenesh1_pg.C_70293 Batrachochytrium dendrobatidis estExt_fgenesh1_pg.C_70293 N 0.000
estExt_fgenesh2_pg.C_210023 Monosiga brevicollis estExt_fgenesh2_pg.C_210023 N 0.000
estExt_fgenesh3_pg.C_140192 Chlorella NC64A estExt_fgenesh3_pg.C_140192 N 0.000
estExt_fgenesh4_pg.C_90052 Volvox carteri estExt_fgenesh4_pg.C_90052 N 0.000
estExt_Genewise1.C_20589 Coccomyxa C 169 estExt_Genewise1.C_20589 N 0.000
estExt_Genewise1Plus.C_20668 Chlorella vulgaris estExt_Genewise1Plus.C_20668 N 0.000
estExt_Genewise1Plus.C_250151 Melampsora laricis populina estExt_Genewise1Plus.C_250151 N 0.000
eugene.0700010461 Ostreococcus lucimarinus eugene.0700010461 N 0.000
e_gw1.07.00.268.1 Ostreococcus tauri e_gw1.07.00.268.1 N 0.000
e_gw1.1.604.1 Mucor circinelloides e_gw1.1.604.1 N 0.000
e_gw1.10.100.1 Phycomyces blakesleeanus e_gw1.10.100.1 N 0.000
e_gw1.35.542.1 Selaginella moellendorfii e_gw1.35.542.1 N 0.000
e_gw1.7.291.1 Tremella mesenterica e_gw1.7.291.1 N 0.000
e_gw1.7.303.1 Ostreococcus RCC809 e_gw1.7.303.1 N 0.000
e_gwh2.2.654.1 Phanerochaete chrysosporium e_gwh2.2.654.1 N 0.000
fgenesh1_pm.00866_#_279 Aspergillus carbonarius fgenesh1_pm.00866_#_279 N 0.000
KLLA0C00506g Kluyveromyces lactis KLLA0C00506g N 0.000
MDP0000130613 Malus x domestica MDP0000130613 N 0.000
MDP0000221204 Malus x domestica MDP0000221204 N 0.000
Medtr5g094630 Medicago truncatula Medtr5g094630 N 0.000
NCLIV_025560 Neospora caninum NCLIV_025560 N 0.000
pasa_Sanger_mRNA6968 Chlamydomonas reinhardtii pasa_Sanger_mRNA6968 N 0.000
Pc15g00270 Penicillium chrysogenum Pc15g00270 N 0.000
PGUG_03304 Candida guilliermondii PGUG_03304 N 0.000
PHATRDRAFT_45441 Phaeodactylum tricornutum Phatr45441 N 0.000
PK22510.1 Cannabis sativa PK22510.1 N 0.000
PredSwiss_ASS2010_156.1 Pneumocystis carinii PredSwiss_ASS2010_156.1 N 0.000
PTSG_07198 Salpingoeca rosetta PTSG_07198 N 0.000
RO3G_15602 Rhizopus oryzae RO3G_15602 N 0.000
SAKL0C00484g Lachancea kluyveri SAKL0C00484g N 0.000
Skud_Contig2065.14 Saccharomyces kudriavzevii Skud_Contig2065.14 N 0.000
SPPG_02913 Spizellomyces punctatus SPPG_02913 N 0.000
TGGT1_008040 Toxoplasma gondii TGGT1_008040 N 0.000
TGME49_062070 Toxoplasma gondii TGME49_062070 N 0.000
TGVEG_072780 Toxoplasma gondii TGVEG_072780 N 0.000
XP_001186312.1 Strongylocentrotus purpuratus XP_001186312.1 N 0.000
XP_786725.1 Strongylocentrotus purpuratus XP_786725.1 N 0.000
KRR1 Saccharomyces cerevisiae YCL059C N 0.000