XM_002894050.1 (Arabidopsis lyrata)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 fgenesh2_kg.1__3903__AT1G48110.2 T62205_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__3903__AT1G48110.2 YTH 376 466

Links

Other YTH family RBPs
Other Arabidopsis lyrata RBPs

181 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29765.m000746 Ricinus communis 29765.m000746 N 0.703
29889.m003364 Ricinus communis 29889.m003364 N 0.846
29890.m000285 Ricinus communis 29890.m000285 N 0.736
29929.m004643 Ricinus communis 29929.m004643 N 0.747
29955.m001158 Ricinus communis 29955.m001158 N 0.747
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.769
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.725
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.714
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.769
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.747
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.846
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.835
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.747
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.758
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.725
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.758
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.813
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.736
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.725
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.714
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.758
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.758
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.725
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.780
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.714
BRADI2G12380 Brachypodium distachyon BRADI2G12380 N 0.758
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.758
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.714
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.736
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.769
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.703
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.703
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.747
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.747
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.747
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.747
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.747
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.758
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.758
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.703
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.703
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.703
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.758
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.758
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.758
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.703
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.703
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.703
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.703
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.703
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.703
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.703
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.703
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.703
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.703
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.703
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.703
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.703
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.703
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.703
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.890
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.890
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.747
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.769
chr6.CM0885.260.nc Lotus japonicus chr6.CM0885.260.nc N 0.714
chr6.CM0885.320.nc Lotus japonicus chr6.CM0885.320.nc N 0.714
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.857
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.835
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.703
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.758
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.703
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.725
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.703
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.725
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.769
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.923
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 1.000
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.758
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.780
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.835
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.736
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.780
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.802
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.813
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.736
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.857
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.747
GRMZM2G056573 Zea mays GRMZM2G056573 N 0.725
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.736
GRMZM2G098174 Zea mays GRMZM2G098174 N 0.703
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.714
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.747
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.736
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.747
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.747
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.747
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.725
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.868
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.703
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.758
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.747
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.747
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.703
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.725
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.714
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.725
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.714
LjT10H22.120.nd Lotus japonicus LjT10H22.120.nd N 0.725
LOC_Os01g22630 Oryza sativa LOC_Os01g22630 N 0.736
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.758
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.813
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.714
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.780
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.725
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.714
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.758
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.758
MDP0000124048 Malus x domestica MDP0000124048 N 0.703
MDP0000132385 Malus x domestica MDP0000132385 N 0.846
MDP0000171737 Malus x domestica MDP0000171737 N 0.758
MDP0000189157 Malus x domestica MDP0000189157 N 0.703
MDP0000199885 Malus x domestica MDP0000199885 N 0.725
MDP0000231231 Malus x domestica MDP0000231231 N 0.769
MDP0000248088 Malus x domestica MDP0000248088 N 0.769
MDP0000256033 Malus x domestica MDP0000256033 N 0.736
MDP0000286471 Malus x domestica MDP0000286471 N 0.769
MDP0000287088 Malus x domestica MDP0000287088 N 0.769
MDP0000306387 Malus x domestica MDP0000306387 N 0.846
MDP0000405927 Malus x domestica MDP0000405927 N 0.769
MDP0000488248 Malus x domestica MDP0000488248 N 0.714
MDP0000488588 Malus x domestica MDP0000488588 N 0.714
MDP0000552419 Malus x domestica MDP0000552419 N 0.769
MDP0000617859 Malus x domestica MDP0000617859 N 0.769
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.725
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.846
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.736
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.714
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.780
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.835
mgf001716m Mimulus guttatus mgf001716m N 0.725
mgf009938m Mimulus guttatus mgf009938m N 0.747
mgf013853m Mimulus guttatus mgf013853m N 0.747
mgf013935m Mimulus guttatus mgf013935m N 0.714
mgf014143m Mimulus guttatus mgf014143m N 0.835
mgf014829m Mimulus guttatus mgf014829m N 0.725
mgf015583m Mimulus guttatus mgf015583m N 0.835
mgf017987m Mimulus guttatus mgf017987m N 0.824
mgf019821m Mimulus guttatus mgf019821m N 0.747
mgf019846m Mimulus guttatus mgf019846m N 0.714
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.714
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.802
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.736
PDK_20s1906441g001 Phoenix dactylifera PDK_20s1906441g001 N 0.725
PK01736.1 Cannabis sativa PK01736.1 N 0.714
PK02315.1 Cannabis sativa PK02315.1 N 0.791
PK05579.1 Cannabis sativa PK05579.1 N 0.747
PK17832.1 Cannabis sativa PK17832.1 N 0.758
PK23104.1 Cannabis sativa PK23104.1 N 0.769
PK23716.1 Cannabis sativa PK23716.1 N 0.714
PK26094.1 Cannabis sativa PK26094.1 N 0.714
ppa002483m Prunus persica ppa002483m N 0.758
ppa002588m Prunus persica ppa002588m N 0.758
ppa002677m Prunus persica ppa002677m N 0.736
ppa003557m Prunus persica ppa003557m N 0.725
ppa003664m Prunus persica ppa003664m N 0.769
ppa018635m Prunus persica ppa018635m N 0.857
SB01G005500 Sorghum bicolor Sb01g005500 N 0.714
SB01G008170 Sorghum bicolor Sb01g008170 N 0.714
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.747
SB02G003990 Sorghum bicolor Sb02g003990 N 0.736
SB03G031190 Sorghum bicolor Sb03g031190 N 0.747
SB06G027960 Sorghum bicolor Sb06g027960 N 0.736
SB07G006330 Sorghum bicolor Sb07g006330 N 0.758
SB07G024500 Sorghum bicolor Sb07g024500 N 0.758
SB09G000580 Sorghum bicolor Sb09g000580 N 0.714
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.703
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.769
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.725
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.923
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.758
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.725