AAH72090 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAH72090 T59518_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.921
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.921
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.921
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.900
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.800
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAH72090 RRM 16 85
AAH72090 RRM 107 176

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

301 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.921
Ame_R000626 Ailuropoda melanoleuca Ame_R000626 I 0.738
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.921
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.000
LOC785445 Bos taurus ENSBTAG00000025621 I 0.872
ROA2_BOVIN Bos taurus ENSBTAG00000005726 I 0.738
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.921
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.864
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.900
LOC100401647 Callithrix jacchus ENSCJAG00000007908 I 0.738
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.728
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.755
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.858
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.914
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.900
ENSCJAG00000002606 Callithrix jacchus ENSCJAG00000002606 I 0.000
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.845
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.837
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.858
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.851
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.921
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.864
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.893
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.893
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.823
ENSCJAG00000021872 Callithrix jacchus ENSCJAG00000021872 I 0.738
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.921
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.921
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.837
ENSCJAG00000015222 Callithrix jacchus ENSCJAG00000015222 I 0.000
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.743
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.845
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.811
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.900
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.735
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.721
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.851
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.921
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.871
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.804
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.879
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.817
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.721
HNRNPA2B1 Canis familiaris ENSCAFG00000002885 I 0.738
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.837
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.803
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.879
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.818
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.731
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.817
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.817
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.721
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.810
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.731
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.789
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.845
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.766
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.809
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.724
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.907
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.832
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.893
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.921
HNRNPA2B1 Dasypus novemcinctus ENSDNOG00000012928 I 0.738
Hnrnpa2b1 Dipodomys ordii ENSDORG00000005482 I 0.738
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.836
HNRNPA2B1 Echinops telfairi ENSETEG00000018577 I 0.738
LOC100068539 Equus caballus ENSECAG00000000782 I 0.738
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.921
LOC100054206 Equus caballus ENSECAG00000006699 I 0.831
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.907
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.871
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.921
Q5ZME1_CHICK Gallus gallus ENSGALG00000011036 I 0.738
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.893
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.907
HNRNPA2B1 Gorilla gorilla ENSGGOG00000017072 I 0.738
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.830
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.921
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.703
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.724
HNRNPA2B1 Homo sapiens ENSG00000122566 D 0.738
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.921
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.900
HNRNPA1 Homo sapiens ENSG00000135486 D 0.921
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.879
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.921
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.907
HNRNPA2B1 Loxodonta africana ENSLAFG00000006902 I 0.738
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.858
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.914
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.900
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.745
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.736
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.921
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.803
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.759
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.710
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.717
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.844
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.810
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.900
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.914
HNRNPA2B1 Macaca mulatta ENSMMUG00000003619 I 0.738
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.732
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.747
ENSMEUG00000014479 Macropus eugenii ENSMEUG00000014479 I 0.738
ENSMEUG00000001084 Macropus eugenii ENSMEUG00000001084 I 0.738
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.901
HNRNPA2B1 Meleagris gallopavo ENSMGAG00000010635 I 0.738
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.788
HNRNPA2B1 Monodelphis domestica ENSMODG00000000603 I 0.738
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.921
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.893
Hnrnpa2b1 Mus musculus ENSMUSG00000004980 I 0.738
HNRNPA2B1 Myotis lucifugus ENSMLUG00000007578 I 0.738
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.921
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.831
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.914
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.914
HNRNPA2B1 Ornithorhynchus anatinus ENSOANG00000009159 I 0.738
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.907
HNRNPA2B1 Oryctolagus cuniculus ENSOCUG00000026859 I 0.738
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.921
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.914
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.907
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.893
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.921
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.907
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.900
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.907
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.914
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.858
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.886
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.914
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.731
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.921
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.921
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.921
HNRNPA2B1 Pan troglodytes ENSPTRG00000019002 I 0.738
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.921
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.717
ENSPPYG00000017715 Pongo pygmaeus ENSPPYG00000017715 I 0.738
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.879
HNRNPA2B1 Pteropus vampyrus ENSPVAG00000006296 I 0.738
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.921
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.886
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.921
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.866
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.886
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.844
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.886
Hnrnpa2b1 Rattus norvegicus ENSRNOG00000011175 I 0.738
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.871
D4A1X0_RAT Rattus norvegicus ENSRNOG00000021254 I 0.714
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.836
ENSSTOG00000006202 Spermophilus tridecemlineatus ENSSTOG00000006202 I 0.738
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.921
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.738
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.921
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.851
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.872
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.921
HNRNPA2B1 Tursiops truncatus ENSTTRG00000000709 I 0.738
CBF67578 Xenopus laevis CBF67578 I 0.831
CBF67672 Xenopus laevis CBF67672 I 1.000
CBU92428 Xenopus laevis CBU92428 I 0.986
CBU92451 Xenopus laevis CBU92451 I 0.831
CBU92546 Xenopus laevis CBU92546 I 1.000
P17130 Xenopus laevis P17130 I 0.986
CBF67555 Xenopus laevis CBF67555 I 0.986
AAI69881 Xenopus laevis AAI69881 I 0.831
AAH45260 Xenopus laevis AAH45260 I 0.979
AAA49950 Xenopus laevis AAA49950 I 0.831
AAA49742 Xenopus laevis AAA49742 I 0.986
AAA49741 Xenopus laevis AAA49741 I 0.986
P51992 Xenopus laevis P51992 I 0.831
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.979
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.843