MDP0000231231 (Malus x domestica)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 MDP0000231231 T62533_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000231231 YTH 500 590

Links

Other YTH family RBPs
Other Malus x domestica RBPs

191 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29765.m000746 Ricinus communis 29765.m000746 N 0.736
29889.m003364 Ricinus communis 29889.m003364 N 0.813
29890.m000285 Ricinus communis 29890.m000285 N 0.736
29929.m004643 Ricinus communis 29929.m004643 N 0.747
29950.m001140 Ricinus communis 29950.m001140 N 0.736
29955.m001158 Ricinus communis 29955.m001158 N 0.901
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.758
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.769
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.725
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.879
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.725
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.791
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.725
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.747
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.714
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.879
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.747
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.758
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.758
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.703
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.725
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.791
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.769
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.725
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.747
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.736
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.890
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.703
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.758
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.736
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.703
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.747
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.703
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.703
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.703
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.703
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.736
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.736
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.736
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.736
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.923
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.923
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.725
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.725
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.725
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.791
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.791
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.791
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.725
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.725
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.747
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.703
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.703
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.703
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.703
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.703
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.703
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.703
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.703
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.703
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.703
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.703
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.703
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.824
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.824
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.758
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.791
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.813
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.802
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.736
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.758
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.725
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.769
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.868
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.791
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.725
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.714
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.703
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.725
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.780
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.813
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.714
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.890
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.780
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.813
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.824
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.890
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.703
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.835
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.780
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.736
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.725
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.879
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.736
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.868
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.736
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.780
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.758
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.846
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.736
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.725
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.791
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.736
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.758
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.934
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.725
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.802
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.780
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.725
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.890
LjT10H22.120.nd Lotus japonicus LjT10H22.120.nd N 0.714
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.879
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.747
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.758
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.725
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.802
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.703
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.725
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.791
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.769
MDP0000124048 Malus x domestica MDP0000124048 N 0.747
MDP0000129009 Malus x domestica MDP0000129009 N 0.714
MDP0000132385 Malus x domestica MDP0000132385 N 0.813
MDP0000171737 Malus x domestica MDP0000171737 N 0.945
MDP0000189157 Malus x domestica MDP0000189157 N 0.714
MDP0000199885 Malus x domestica MDP0000199885 N 0.714
MDP0000248088 Malus x domestica MDP0000248088 N 0.824
MDP0000256033 Malus x domestica MDP0000256033 N 0.758
MDP0000286471 Malus x domestica MDP0000286471 N 1.000
MDP0000287088 Malus x domestica MDP0000287088 N 0.813
MDP0000306387 Malus x domestica MDP0000306387 N 0.813
MDP0000405927 Malus x domestica MDP0000405927 N 0.813
MDP0000488248 Malus x domestica MDP0000488248 N 0.769
MDP0000488588 Malus x domestica MDP0000488588 N 0.747
MDP0000552419 Malus x domestica MDP0000552419 N 0.824
MDP0000617859 Malus x domestica MDP0000617859 N 0.813
MDP0000718677 Malus x domestica MDP0000718677 N 0.725
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.835
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.901
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.703
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.791
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.802
mgf001716m Mimulus guttatus mgf001716m N 0.780
mgf009938m Mimulus guttatus mgf009938m N 0.747
mgf013853m Mimulus guttatus mgf013853m N 0.747
mgf013935m Mimulus guttatus mgf013935m N 0.725
mgf014143m Mimulus guttatus mgf014143m N 0.769
mgf014829m Mimulus guttatus mgf014829m N 0.780
mgf015583m Mimulus guttatus mgf015583m N 0.769
mgf017987m Mimulus guttatus mgf017987m N 0.769
mgf019821m Mimulus guttatus mgf019821m N 0.769
mgf019846m Mimulus guttatus mgf019846m N 0.758
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.747
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.802
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.703
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.835
PDK_20s1906441g001 Phoenix dactylifera PDK_20s1906441g001 N 0.714
PK01736.1 Cannabis sativa PK01736.1 N 0.747
PK02315.1 Cannabis sativa PK02315.1 N 0.824
PK05579.1 Cannabis sativa PK05579.1 N 0.747
PK17832.1 Cannabis sativa PK17832.1 N 0.769
PK23104.1 Cannabis sativa PK23104.1 N 0.879
PK23716.1 Cannabis sativa PK23716.1 N 0.736
PK26094.1 Cannabis sativa PK26094.1 N 0.780
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.791
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.736
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.714
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.714
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.791
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.934
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.791
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.780
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.923
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.780
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.725
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.736
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.703
ppa002483m Prunus persica ppa002483m N 0.791
ppa002588m Prunus persica ppa002588m N 0.791
ppa002677m Prunus persica ppa002677m N 0.747
ppa003557m Prunus persica ppa003557m N 0.736
ppa003664m Prunus persica ppa003664m N 0.967
ppa018635m Prunus persica ppa018635m N 0.813
SB01G005500 Sorghum bicolor Sb01g005500 N 0.714
SB01G008170 Sorghum bicolor Sb01g008170 N 0.725
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.736
SB02G003990 Sorghum bicolor Sb02g003990 N 0.747
SB03G031190 Sorghum bicolor Sb03g031190 N 0.868
SB06G027960 Sorghum bicolor Sb06g027960 N 0.747
SB07G006330 Sorghum bicolor Sb07g006330 N 0.780
SB07G024500 Sorghum bicolor Sb07g024500 N 0.780