XM_855847.1 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000006327 T35039_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.929
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.929
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.929
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.907
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.779
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000009492 RRM 16 85
ENSCAFP00000009492 RRM 107 176

Links

Other RRM family RBPs
Other Canis familiaris RBPs

302 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ACLA_080400 Aspergillus clavatus CADACLAG00007885 N 0.000
AFLA_046450 Aspergillus flavus CADAFLAG00005972 N 0.000
AFUA_2G08570 Aspergillus fumigatus CADAFUAG00004718 N 0.000
AMAG_02834 Allomyces macrogynus AMAG_02834 N 0.000
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.000
Ame_R004608 Ailuropoda melanoleuca Ame_R004608 N 0.000
An12g03930 Aspergillus niger CADANGAG00009835 N 0.000
Aqu1.228507 Amphimedon queenslandica Aqu1.228507 N 0.000
BC1G_04395 Botrytis cinerea BC1G_04395 N 0.000
BDBG_08091 Blastomyces dermatitidis BDBG_08091 N 0.000
BRADI3G48560 Brachypodium distachyon BRADI3G48560 N 0.000
cassava43645.valid.m1 Manihot esculenta cassava43645.valid.m1 N 0.000
cassava43646.valid.m1 Manihot esculenta cassava43646.valid.m1 N 0.000
cbc2 Schizosaccharomyces pombe SPBC13A2.01c N 0.000
CBP20 Arabidopsis thaliana AT5G44200-TAIR-G N 0.000
CHGG_03355 Chaetomium globosum CHGG_03355 N 0.000
chr3.CM0160.780.nd Lotus japonicus chr3.CM0160.780.nd N 0.000
CIMG_00837 Coccidioides immitis CIMG_00837 N 0.000
CPSG_08054 Coccidioides posadasii CPSG_08054 N 0.000
Cucsa.174450 Cucumis sativus Cucsa.174450 N 0.000
EAT82863.2 Phaeosphaeria nodorum EAT82863.2 N 0.000
EFA74823.1 Polysphondylium pallidum EFA74823.1 N 0.000
ENSPPYG00000014449 Pongo pygmaeus ENSPPYG00000014449 N 0.000
ENSSSCG00000011835 Sus scrofa ENSSSCG00000011835 N 0.000
ENSSSCG00000011840 Sus scrofa ENSSSCG00000011840 N 0.000
ENSSTOG00000001584 Spermophilus tridecemlineatus ENSSTOG00000001584 N 0.000
estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 Nectria haematococca estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 N 0.000
estExt_Genewise1.C_10147 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10147 N 0.000
estExt_Genewise1Plus.C_150343 Trichoderma atroviride estExt_Genewise1Plus.C_150343 N 0.000
estExt_Genewise1Plus.C_40730 Myceliophthora thermophila estExt_Genewise1Plus.C_40730 N 0.000
estExt_Genewise1Plus.C_50921 Neurospora discreta estExt_Genewise1Plus.C_50921 N 0.000
e_gw1.10.746.1 Trichoderma virens e_gw1.10.746.1 N 0.000
e_gw1.17.191.1 Trichoderma reesei e_gw1.17.191.1 N 0.000
e_gw1.18.125.1 Batrachochytrium dendrobatidis e_gw1.18.125.1 N 0.000
e_gw1.3.1174.1 Thielavia terrestris e_gw1.3.1174.1 N 0.000
e_gw1.40.70.1 Melampsora laricis populina e_gw1.40.70.1 N 0.000
e_gw1.80.70.1 Selaginella moellendorfii e_gw1.80.70.1 N 0.000
fgenesh1_pg.C_scaffold_1000747 Cryphonectria parasitica fgenesh1_pg.C_scaffold_1000747 N 0.000
fgenesh1_pm.00772_#_82 Aspergillus carbonarius fgenesh1_pm.00772_#_82 N 0.000
fgeneshMC_pm.5_#_40 Mucor circinelloides fgeneshMC_pm.5_#_40 N 0.000
FGSG_05488 Fusarium graminearum FGSG_05488 N 0.000
FOXG_09405 Fusarium oxysporum FOXG_09405 N 0.000
FVEG_07036 Fusarium verticillioides FVEG_07036 N 0.000
GLRG_00177 Colletotrichum graminicola GLRG_00177 N 0.000
Glyma12g33400.1 Glycine max Glyma12g33400.1 N 0.000
Glyma13g37030.1 Glycine max Glyma13g37030.1 N 0.000
GRMZM2G034804 Zea mays GRMZM2G034804 N 0.000
GSTUMT00010626001 Tuber melanosporum GSTUMT00010626001 N 0.000
GSVIVG00020599001 Vitis vinifera GSVIVG00020599001 N 0.000
gw.81.90.1 Branchiostoma floridae gw.81.90.1 N 0.000
gw.93.114.1 Branchiostoma floridae gw.93.114.1 N 0.000
gw1.1.1171.1 Sporobolomyces roseus gw1.1.1171.1 N 0.000
gw1.29.143.1 Phycomyces blakesleeanus gw1.29.143.1 N 0.000
HCAG_07341 Histoplasma capsulatum HCAG_07341 N 0.000
LOAG_03270 Loa loa LOAG_03270 N 0.000
LOC100404338 Callithrix jacchus ENSCJAG00000013735 N 0.000
LOC_Os02g39890 Oryza sativa LOC_Os02g39890 N 0.000
MCYG_04468 Microsporum canis MCYG_04468 N 0.000
MDP0000315402 Malus x domestica MDP0000315402 N 0.000
mgf009822m Mimulus guttatus mgf009822m N 0.000
MGG_06296 Magnaporthe oryzae MGG_06296 N 0.000
MGYG_02166 Microsporum gypseum MGYG_02166 N 0.000
nasonia_NCBI_hmm134534 Nasonia vitripennis nasonia_NCBI_hmm134534 N 0.000
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.000
NCBP2 Canis familiaris ENSCAFG00000013100 N 0.000
ncbp2 Dictyostelium discoideum DDB_G0287197 N 0.000
NCBP2 Pan troglodytes ENSPTRG00000015789 N 0.000
NCBP2 Equus caballus ENSECAG00000016153 N 0.000
Ncbp2 Mus musculus ENSMUSG00000022774 N 0.000
NCBP2 Oryctolagus cuniculus ENSOCUG00000006738 N 0.000
NCBP2 Myotis lucifugus ENSMLUG00000017500 N 0.000
NCBP2 Microcebus murinus ENSMICG00000003162 N 0.000
NCBP2 Pteropus vampyrus ENSPVAG00000017273 N 0.000
NCBP2 Loxodonta africana ENSLAFG00000006372 N 0.000
NCBP2 Tupaia belangeri ENSTBEG00000015222 N 0.000
NCBP2 Vicugna pacos ENSVPAG00000010369 N 0.000
NCBP2 Otolemur garnettii ENSOGAG00000005009 N 0.000
NCBP2 Homo sapiens ENSG00000114503 N 0.000
NCBP2 Macaca mulatta ENSMMUG00000007825 N 0.000
NCBP2_BOVIN Bos taurus ENSBTAG00000008873 N 0.000
NCBP2_IXOSC Ixodes scapularis ISCW017479 N 0.000
NCU00210 Neurospora crassa NCU00210 N 0.000
NFIA_084190 Neosartorya fischeri CADNFIAG00008064 N 0.000
PABG_07236 Paracoccidioides brasiliensis PABG_07236 N 0.000
Pa_7_2520 Podospora anserina Pa_7_2520 N 0.000
Pc13g04070 Penicillium chrysogenum Pc13g04070 N 0.000
PDK_20s1327431g003 Phoenix dactylifera PDK_20s1327431g003 N 0.000
PGTG_01720 Puccinia graminis PGTG_01720 N 0.000
PHUM535920 Pediculus humanus PHUM535920 N 0.000
Pigz Rattus norvegicus ENSRNOG00000001746 N 0.000
PK11911.1 Cannabis sativa PK11911.1 N 0.000
PMAA_070830 Penicillium marneffei PMAA_070830 N 0.000
ppa010346m Prunus persica ppa010346m N 0.000
PredSwiss_ASS2010_2397.2 Pneumocystis carinii PredSwiss_ASS2010_2397.2 N 0.000
PredSwiss_CON682.3 Pneumocystis carinii PredSwiss_CON682.3 N 0.000
PTRG_00402 Pyrenophora tritici repentis PTRG_00402 N 0.000
SB04G025800 Sorghum bicolor Sb04g025800 N 0.000
SJAG_01064 Schizosaccharomyces japonicus SJAG_01064 N 0.000
SNOG_09598 Stagonospora nodorum SNOG_09598 N 0.000
SOCG_01831 Schizosaccharomyces octosporus SOCG_01831 N 0.000
SPOG_01217 Schizosaccharomyces cryophilus SPOG_01217 N 0.000
SPPG_00516 Spizellomyces punctatus SPPG_00516 N 0.000
SS1G_13629 Sclerotinia sclerotiorum SS1G_13629 N 0.000
TEQG_01953 Trichophyton equinum TEQG_01953 N 0.000
TERG_03424 Trichophyton rubrum TERG_03424 N 0.000
TESG_01120 Trichophyton tonsurans TESG_01120 N 0.000
VDAG_05874 Verticillium dahliae VDAG_05874 N 0.000
VDBG_06810 Verticillium albo atrum VDBG_06810 N 0.000
WUBG_16568 Wuchereria bancrofti WUBG_16568 N 0.000
XM_002863560.1 Arabidopsis lyrata fgenesh2_kg.8__389__AT5G44200.2 N 0.000
XP_002160076.1 Hydra magnipapillata XP_002160076.1 N 0.000