XM_855847.1 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000006327 T35039_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.929
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.929
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.929
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.907
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.779
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000009492 RRM 16 85
ENSCAFP00000009492 RRM 107 176

Links

Other RRM family RBPs
Other Canis familiaris RBPs

302 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_fgenesh2_kg.C_20664 Agaricus bisporus estExt_fgenesh2_kg.C_20664 N 0.000
AMAG_02834 Allomyces macrogynus AMAG_02834 N 0.000
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.000
fgenesh1_pm.00772_#_82 Aspergillus carbonarius fgenesh1_pm.00772_#_82 N 0.000
AFLA_046450 Aspergillus flavus CADAFLAG00005972 N 0.000
AFUA_2G08570 Aspergillus fumigatus CADAFUAG00004718 N 0.000
An12g03930 Aspergillus niger CADANGAG00009835 N 0.000
e_gw1.18.125.1 Batrachochytrium dendrobatidis e_gw1.18.125.1 N 0.000
BDBG_08091 Blastomyces dermatitidis BDBG_08091 N 0.000
BC1G_04395 Botrytis cinerea BC1G_04395 N 0.000
CIMG_00837 Coccidioides immitis CIMG_00837 N 0.000
CPSG_08054 Coccidioides posadasii CPSG_08054 N 0.000
estExt_Genewise1.C_10147 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10147 N 0.000
GLRG_00177 Colletotrichum graminicola GLRG_00177 N 0.000
fgenesh1_pg.C_scaffold_1000747 Cryphonectria parasitica fgenesh1_pg.C_scaffold_1000747 N 0.000
Cucsa.174450 Cucumis sativus Cucsa.174450 N 0.000
ncbp2 Dictyostelium discoideum DDB_G0287197 N 0.000
GID1.0044779 Dictyostelium purpureum GID1.0044779 N 0.000
FGSG_05488 Fusarium graminearum FGSG_05488 N 0.000
FVEG_07036 Fusarium verticillioides FVEG_07036 N 0.000
HCAG_07341 Histoplasma capsulatum HCAG_07341 N 0.000
MGG_06296 Magnaporthe oryzae MGG_06296 N 0.000
e_gw1.40.70.1 Melampsora laricis populina e_gw1.40.70.1 N 0.000
MCYG_04468 Microsporum canis MCYG_04468 N 0.000
MGYG_02166 Microsporum gypseum MGYG_02166 N 0.000
fgeneshMC_pm.5_#_40 Mucor circinelloides fgeneshMC_pm.5_#_40 N 0.000
estExt_Genewise1Plus.C_40730 Myceliophthora thermophila estExt_Genewise1Plus.C_40730 N 0.000
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.000
estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 Nectria haematococca estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 N 0.000
NFIA_084190 Neosartorya fischeri CADNFIAG00008064 N 0.000
NCU00210 Neurospora crassa NCU00210 N 0.000
estExt_Genewise1Plus.C_50921 Neurospora discreta estExt_Genewise1Plus.C_50921 N 0.000
PABG_07236 Paracoccidioides brasiliensis PABG_07236 N 0.000
PHUM535920 Pediculus humanus PHUM535920 N 0.000
Pc13g04070 Penicillium chrysogenum Pc13g04070 N 0.000
PMAA_070830 Penicillium marneffei PMAA_070830 N 0.000
EAT82863.2 Phaeosphaeria nodorum EAT82863.2 N 0.000
gwh2.1.1054.1 Phanerochaete chrysosporium gwh2.1.1054.1 N 0.000
PDK_20s1327431g003 Phoenix dactylifera PDK_20s1327431g003 N 0.000
gw1.29.143.1 Phycomyces blakesleeanus gw1.29.143.1 N 0.000
Pa_7_2520 Podospora anserina Pa_7_2520 N 0.000
EFA74823.1 Polysphondylium pallidum EFA74823.1 N 0.000
e_gw1.121.83.1 Postia placenta e_gw1.121.83.1 N 0.000
PTRG_00402 Pyrenophora tritici repentis PTRG_00402 N 0.000
estExt_fgenesh1_pm.C_20437 Schizophyllum commune estExt_fgenesh1_pm.C_20437 N 0.000
SPOG_01217 Schizosaccharomyces cryophilus SPOG_01217 N 0.000
SJAG_01064 Schizosaccharomyces japonicus SJAG_01064 N 0.000
SOCG_01831 Schizosaccharomyces octosporus SOCG_01831 N 0.000
cbc2 Schizosaccharomyces pombe SPBC13A2.01c N 0.000
SS1G_13629 Sclerotinia sclerotiorum SS1G_13629 N 0.000
SPPG_00516 Spizellomyces punctatus SPPG_00516 N 0.000
gw1.1.1171.1 Sporobolomyces roseus gw1.1.1171.1 N 0.000
SNOG_09598 Stagonospora nodorum SNOG_09598 N 0.000
e_gw1.3.1174.1 Thielavia terrestris e_gw1.3.1174.1 N 0.000
estExt_Genewise1Plus.C_150343 Trichoderma atroviride estExt_Genewise1Plus.C_150343 N 0.000
e_gw1.17.191.1 Trichoderma reesei e_gw1.17.191.1 N 0.000
e_gw1.10.746.1 Trichoderma virens e_gw1.10.746.1 N 0.000
TEQG_01953 Trichophyton equinum TEQG_01953 N 0.000
TERG_03424 Trichophyton rubrum TERG_03424 N 0.000
TESG_01120 Trichophyton tonsurans TESG_01120 N 0.000
GSTUMT00010626001 Tuber melanosporum GSTUMT00010626001 N 0.000
VDBG_06810 Verticillium albo atrum VDBG_06810 N 0.000
VDAG_05874 Verticillium dahliae VDAG_05874 N 0.000
NCBP2 Vicugna pacos ENSVPAG00000010369 N 0.000