PDK_20s1308332g001 (Phoenix dactylifera)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 PDK_20s1308332g001 T62551_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1308332g001 YTH 378 468

Links

Other YTH family RBPs
Other Phoenix dactylifera RBPs

191 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
mgf009938m Mimulus guttatus mgf009938m N 0.879
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.714
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.747
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.802
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.758
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.747
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.813
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.769
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.747
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.736
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.791
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.725
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.736
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.725
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.736
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.703
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.780
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.736
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.769
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.725
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.703
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.725
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.736
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.846
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.846
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.835
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.780
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.835
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.835
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.780
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.780
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.780
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.835
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.835
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.835
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.835
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.846
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.846
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.846
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.846
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.846
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.846
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.846
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.846
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.846
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.846
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.835
mgf013853m Mimulus guttatus mgf013853m N 0.879
ppa018635m Prunus persica ppa018635m N 0.736
MDP0000287088 Malus x domestica MDP0000287088 N 0.747
MDP0000286471 Malus x domestica MDP0000286471 N 0.747
MDP0000248088 Malus x domestica MDP0000248088 N 0.747
MDP0000231231 Malus x domestica MDP0000231231 N 0.747
MDP0000189157 Malus x domestica MDP0000189157 N 0.703
MDP0000171737 Malus x domestica MDP0000171737 N 0.747
MDP0000132385 Malus x domestica MDP0000132385 N 0.747
MDP0000129009 Malus x domestica MDP0000129009 N 0.835
MDP0000124048 Malus x domestica MDP0000124048 N 0.835
MDP0000306387 Malus x domestica MDP0000306387 N 0.747
MDP0000405927 Malus x domestica MDP0000405927 N 0.747
MDP0000488588 Malus x domestica MDP0000488588 N 0.813
ppa003664m Prunus persica ppa003664m N 0.758
ppa002677m Prunus persica ppa002677m N 0.714
ppa002588m Prunus persica ppa002588m N 0.747
ppa002483m Prunus persica ppa002483m N 0.747
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.714
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.736
MDP0000718677 Malus x domestica MDP0000718677 N 0.846
MDP0000617859 Malus x domestica MDP0000617859 N 0.747
MDP0000552419 Malus x domestica MDP0000552419 N 0.747
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.714
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.703
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.747
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.725
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.835
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.714
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.890
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.824
GRMZM2G056573 Zea mays GRMZM2G056573 N 0.703
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.791
mgf019846m Mimulus guttatus mgf019846m N 0.714
mgf019821m Mimulus guttatus mgf019821m N 0.714
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.703
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.835
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.802
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.736
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.736
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.791
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.758
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.758
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.747
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.780
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.714
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.714
mgf013935m Mimulus guttatus mgf013935m N 0.868
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.758
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.714
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.791
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.813
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.769
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.736
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.802
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.725
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.879
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.802
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.813
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.901
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.758
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.802
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.736
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.725
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.835
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.758
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.824
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.780
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.703
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.714
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.703
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.813
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.747
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.736
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.780
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.714
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.703
PK26094.1 Cannabis sativa PK26094.1 N 0.736
PK23716.1 Cannabis sativa PK23716.1 N 0.835
PK23104.1 Cannabis sativa PK23104.1 N 0.736
PK17832.1 Cannabis sativa PK17832.1 N 0.769
PK05579.1 Cannabis sativa PK05579.1 N 0.747
PK02315.1 Cannabis sativa PK02315.1 N 0.725
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.703
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.769
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.780
BGIOSIBCE013986 Oryza indica BGIOSIBCE013986 N 0.703
BGIOSIBCE012954 Oryza indica BGIOSIBCE012954 N 0.769
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.736
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.791
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.736
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.835
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.703
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.714
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.824
PK01736.1 Cannabis sativa PK01736.1 N 0.703
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.857
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.758
SB07G024500 Sorghum bicolor Sb07g024500 N 0.802
SB07G006330 Sorghum bicolor Sb07g006330 N 0.813
SB06G027960 Sorghum bicolor Sb06g027960 N 0.791
SB03G031190 Sorghum bicolor Sb03g031190 N 0.725
SB02G003990 Sorghum bicolor Sb02g003990 N 0.824
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.835
SB01G008170 Sorghum bicolor Sb01g008170 N 0.890
SB01G005500 Sorghum bicolor Sb01g005500 N 0.846
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.714
SB09G000580 Sorghum bicolor Sb09g000580 N 0.747
29889.m003364 Ricinus communis 29889.m003364 N 0.703
29890.m000285 Ricinus communis 29890.m000285 N 0.747
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.835
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.835
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.835
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.835
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.747
30169.m006347 Ricinus communis 30169.m006347 N 0.714
29955.m001158 Ricinus communis 29955.m001158 N 0.725
29950.m001140 Ricinus communis 29950.m001140 N 0.802
29929.m004643 Ricinus communis 29929.m004643 N 0.747
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.846
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.747
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.769
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.780
LOC_Os04g04000 Oryza sativa LOC_Os04g04000 N 0.703
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.901
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.736
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.791
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.736
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.758
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.791
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.703
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.747
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.813
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.813
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.736
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.725
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.758
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.758
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.758
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.703
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.835
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.747
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.802
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.780