ENSEEUG00000000494 (Erinaceus europaeus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSEEUG00000000494 T36730_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.950
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.950
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.950
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.929
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.771
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSEEUP00000000439 RRM 16 85
ENSEEUP00000000439 RRM 107 176

Links

Other RRM family RBPs
Other Erinaceus europaeus RBPs

309 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
EuGene1000054 Heterobasidion annosum EuGene1000054 N 0.000
EuGene1000075 Heterobasidion annosum EuGene1000075 N 0.000
EuGene15000010 Heterobasidion annosum EuGene15000010 N 0.000
EuGene2000035 Heterobasidion annosum EuGene2000035 N 0.000
EuGene2000565 Heterobasidion annosum EuGene2000565 N 0.000
EuGene4001273 Heterobasidion annosum EuGene4001273 N 0.000
EuGene5000027 Heterobasidion annosum EuGene5000027 N 0.000
EuGene5000059 Heterobasidion annosum EuGene5000059 N 0.000
EuGene5000105 Heterobasidion annosum EuGene5000105 N 0.000
EuGene5000232 Heterobasidion annosum EuGene5000232 N 0.000
EuGene6000251 Heterobasidion annosum EuGene6000251 N 0.000
EuGene8000286 Heterobasidion annosum EuGene8000286 N 0.000
EuGene8000521 Heterobasidion annosum EuGene8000521 N 0.000
fgenesh2_pg.C_scaffold_11000363 Heterobasidion annosum fgenesh2_pg.C_scaffold_11000363 N 0.000
fgenesh2_pg.C_scaffold_15000101 Heterobasidion annosum fgenesh2_pg.C_scaffold_15000101 N 0.000
fgenesh2_pg.C_scaffold_18000055 Heterobasidion annosum fgenesh2_pg.C_scaffold_18000055 N 0.000
fgenesh2_pg.C_scaffold_3000140 Heterobasidion annosum fgenesh2_pg.C_scaffold_3000140 N 0.000
fgenesh2_pg.C_scaffold_5000364 Heterobasidion annosum fgenesh2_pg.C_scaffold_5000364 N 0.000
fgenesh2_pg.C_scaffold_9000335 Heterobasidion annosum fgenesh2_pg.C_scaffold_9000335 N 0.000
fgenesh3_pg.C_scaffold_13000017 Chlorella NC64A fgenesh3_pg.C_scaffold_13000017 N 0.000
Genemark.7683_g Heterobasidion annosum Genemark.7683_g N 0.000
IGS.gm_13_00027 Chlorella NC64A IGS.gm_13_00027 N 0.000
IGS.gm_1_00187 Chlorella NC64A IGS.gm_1_00187 N 0.000