CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Cucsa.135220
(
Cucumis sativus
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
Cucsa.135220
T62346_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.135220.1
YTH
388
478
LFFSVNASGQFCGVAEMVGPVDFNKDMDFWQQDKWNGSFPVKWHIIKDVPNNNFRHVILENNENKPVTNSRDTQEIPLKKGLEMLKLFKSH
Cucsa.135220.2
YTH
388
478
LFFSVNASGQFCGVAEMVGPVDFNKDMDFWQQDKWNGSFPVKWHIIKDVPNNNFRHVILENNENKPVTNSRDTQEIPLKKGLEMLKLFKSH
Cucsa.135220.3
YTH
388
478
LFFSVNASGQFCGVAEMVGPVDFNKDMDFWQQDKWNGSFPVKWHIIKDVPNNNFRHVILENNENKPVTNSRDTQEIPLKKGLEMLKLFKSH
Cucsa.135220.4
YTH
382
472
LFFSVNASGQFCGVAEMVGPVDFNKDMDFWQQDKWNGSFPVKWHIIKDVPNNNFRHVILENNENKPVTNSRDTQEIPLKKGLEMLKLFKSH
Cucsa.135220.5
YTH
360
450
LFFSVNASGQFCGVAEMVGPVDFNKDMDFWQQDKWNGSFPVKWHIIKDVPNNNFRHVILENNENKPVTNSRDTQEIPLKKGLEMLKLFKSH
Links
Other
YTH
family RBPs
Other
Cucumis sativus
RBPs
196 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LinJ31_V3.0090
Leishmania infantum
LinJ31_V3.0090
N
0.000
LmjF31.0080
Leishmania major
LmjF31.0080
N
0.000
LmxM30.0080
Leishmania mexicana
LmxM30.0080
N
0.000