Cucsa.135220 (Cucumis sativus)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 Cucsa.135220 T62346_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.135220.1 YTH 388 478
Cucsa.135220.2 YTH 388 478
Cucsa.135220.3 YTH 388 478
Cucsa.135220.4 YTH 382 472
Cucsa.135220.5 YTH 360 450

Links

Other YTH family RBPs
Other Cucumis sativus RBPs

196 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.747
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.714
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.747
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.725
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.901
Glyma16g00490.1 Glycine max Glyma16g00490.1 N 0.736
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.769
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.857
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.857
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.769
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.769
mgf001716m Mimulus guttatus mgf001716m N 0.758
mgf009938m Mimulus guttatus mgf009938m N 0.725
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.769
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.780
mgf019846m Mimulus guttatus mgf019846m N 0.747
mgf019821m Mimulus guttatus mgf019821m N 0.747
mgf017987m Mimulus guttatus mgf017987m N 0.857
mgf015583m Mimulus guttatus mgf015583m N 0.868
mgf014829m Mimulus guttatus mgf014829m N 0.758
mgf014143m Mimulus guttatus mgf014143m N 0.868
mgf013935m Mimulus guttatus mgf013935m N 0.725
mgf013853m Mimulus guttatus mgf013853m N 0.725
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.703
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.879
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.769
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.703
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.703
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.703
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.703
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.703
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.703
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.703
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.714
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.758
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.758
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.703
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.703
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.714
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.802
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.725
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.758
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.879
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.879
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.703
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.703
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.703
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.758
ppa018635m Prunus persica ppa018635m N 0.890
MDP0000552419 Malus x domestica MDP0000552419 N 0.747
MDP0000488588 Malus x domestica MDP0000488588 N 0.725
MDP0000488248 Malus x domestica MDP0000488248 N 0.736
MDP0000405927 Malus x domestica MDP0000405927 N 0.758
MDP0000306387 Malus x domestica MDP0000306387 N 0.868
MDP0000287088 Malus x domestica MDP0000287088 N 0.758
MDP0000286471 Malus x domestica MDP0000286471 N 0.802
MDP0000256033 Malus x domestica MDP0000256033 N 0.758
MDP0000248088 Malus x domestica MDP0000248088 N 0.747
MDP0000231231 Malus x domestica MDP0000231231 N 0.802
MDP0000617859 Malus x domestica MDP0000617859 N 0.758
MDP0000718677 Malus x domestica MDP0000718677 N 0.714
ppa003664m Prunus persica ppa003664m N 0.813
ppa003557m Prunus persica ppa003557m N 0.747
ppa002677m Prunus persica ppa002677m N 0.736
ppa002588m Prunus persica ppa002588m N 0.769
ppa002483m Prunus persica ppa002483m N 0.769
PDK_20s1906441g001 Phoenix dactylifera PDK_20s1906441g001 N 0.736
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.747
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.703
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.846
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.769
MDP0000199885 Malus x domestica MDP0000199885 N 0.747
MDP0000189157 Malus x domestica MDP0000189157 N 0.703
MDP0000171737 Malus x domestica MDP0000171737 N 0.802
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.890
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.769
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.725
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.780
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.879
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.758
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.758
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.769
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.802
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.714
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.758
chr6.CM0885.260.nc Lotus japonicus chr6.CM0885.260.nc N 0.758
MDP0000132385 Malus x domestica MDP0000132385 N 0.868
MDP0000129009 Malus x domestica MDP0000129009 N 0.703
MDP0000124048 Malus x domestica MDP0000124048 N 0.725
LjT10H22.120.nd Lotus japonicus LjT10H22.120.nd N 0.758
LjSGA_073042.1 Lotus japonicus LjSGA_073042.1 N 0.728
LjSGA_044186.1 Lotus japonicus LjSGA_044186.1 N 0.728
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.758
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.802
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.890
chr6.CM0885.320.nc Lotus japonicus chr6.CM0885.320.nc N 0.758
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.802
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.780
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.714
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.714
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.725
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.780
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.769
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.725
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.813
BRADI2G12380 Brachypodium distachyon BRADI2G12380 N 0.736
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.747
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.846
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.703
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.835
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.758
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.747
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.714
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.747
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.890
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.736
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.703
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.714
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.780
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.758
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.736
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.780
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.780
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.714
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.835
ECT9 Arabidopsis thaliana AT1G27960-TAIR-G N 0.703
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.835
PK26094.1 Cannabis sativa PK26094.1 N 0.769
PK23716.1 Cannabis sativa PK23716.1 N 0.714
PK23104.1 Cannabis sativa PK23104.1 N 0.769
PK17832.1 Cannabis sativa PK17832.1 N 0.769
PK05579.1 Cannabis sativa PK05579.1 N 0.747
PK02315.1 Cannabis sativa PK02315.1 N 0.846
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.758
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.714
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.714
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.747
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.736
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.857
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.725
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.813
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.703
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.835
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.714
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.780
PK01736.1 Cannabis sativa PK01736.1 N 0.725
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.824
29929.m004643 Ricinus communis 29929.m004643 N 0.758
29890.m000285 Ricinus communis 29890.m000285 N 0.736
29889.m003364 Ricinus communis 29889.m003364 N 0.846
29765.m000746 Ricinus communis 29765.m000746 N 0.725
SB09G004590 Sorghum bicolor Sb09g004590 N 0.703
SB09G000580 Sorghum bicolor Sb09g000580 N 0.725
SB07G024500 Sorghum bicolor Sb07g024500 N 0.791
SB07G006330 Sorghum bicolor Sb07g006330 N 0.780
SB06G027960 Sorghum bicolor Sb06g027960 N 0.736
SB03G031190 Sorghum bicolor Sb03g031190 N 0.802
29950.m001140 Ricinus communis 29950.m001140 N 0.758
29955.m001158 Ricinus communis 29955.m001158 N 0.791
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.824
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.769
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.769
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.769
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.769
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.703
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.703
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.703
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.703
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.758
SB02G003990 Sorghum bicolor Sb02g003990 N 0.703
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.769
SB01G008170 Sorghum bicolor Sb01g008170 N 0.747
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.769
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.780
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.780
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.714
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.747
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.780
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.747
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.857
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.725
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.813
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.747
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.736
SB01G005500 Sorghum bicolor Sb01g005500 N 0.703
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.736
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.725
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.747
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.758
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.769
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.835
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.868
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.791
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.747
LOC_Os01g22630 Oryza sativa LOC_Os01g22630 N 0.725