CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Cucsa.135220
(
Cucumis sativus
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
Cucsa.135220
T62346_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.135220.1
YTH
388
478
LFFSVNASGQFCGVAEMVGPVDFNKDMDFWQQDKWNGSFPVKWHIIKDVPNNNFRHVILENNENKPVTNSRDTQEIPLKKGLEMLKLFKSH
Cucsa.135220.2
YTH
388
478
LFFSVNASGQFCGVAEMVGPVDFNKDMDFWQQDKWNGSFPVKWHIIKDVPNNNFRHVILENNENKPVTNSRDTQEIPLKKGLEMLKLFKSH
Cucsa.135220.3
YTH
388
478
LFFSVNASGQFCGVAEMVGPVDFNKDMDFWQQDKWNGSFPVKWHIIKDVPNNNFRHVILENNENKPVTNSRDTQEIPLKKGLEMLKLFKSH
Cucsa.135220.4
YTH
382
472
LFFSVNASGQFCGVAEMVGPVDFNKDMDFWQQDKWNGSFPVKWHIIKDVPNNNFRHVILENNENKPVTNSRDTQEIPLKKGLEMLKLFKSH
Cucsa.135220.5
YTH
360
450
LFFSVNASGQFCGVAEMVGPVDFNKDMDFWQQDKWNGSFPVKWHIIKDVPNNNFRHVILENNENKPVTNSRDTQEIPLKKGLEMLKLFKSH
Links
Other
YTH
family RBPs
Other
Cucumis sativus
RBPs
196 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAI69815
Xenopus laevis
AAI69815
I
0.000
FUBP1
Pan troglodytes
ENSPTRG00000000888
I
0.000
ENSPPYG00000001219
Pongo pygmaeus
ENSPPYG00000001219
I
0.000
ENSORLG00000003540
Oryzias latipes
ENSORLG00000003540
I
0.000
FUBP1
Otolemur garnettii
ENSOGAG00000014233
I
0.000
FUBP1
Oryctolagus cuniculus
ENSOCUG00000002225
I
0.000
FUBP1
Ornithorhynchus anatinus
ENSOANG00000009777
I
0.000
Fubp1
Mus musculus
ENSMUSG00000028034
I
0.000
FUBP1
Macaca mulatta
ENSMMUG00000002899
I
0.000
FUBP1
Myotis lucifugus
ENSMLUG00000014802
I
0.000
FUBP1
Procavia capensis
ENSPCAG00000012617
I
0.000
FUBP1
Meleagris gallopavo
ENSMGAG00000009424
I
0.000
ENSSSCG00000003767
Sus scrofa
ENSSSCG00000003767
I
0.000
ENSSSCG00000003771
Sus scrofa
ENSSSCG00000003771
I
0.000
AAH70981
Xenopus laevis
AAH70981
I
0.000
AAH44277
Xenopus laevis
AAH44277
I
0.000
Ame_R010564
Ailuropoda melanoleuca
Ame_R010564
I
0.000
fubp1
Xenopus tropicalis
ENSXETG00000013137
I
0.000
FUBP1
Vicugna pacos
ENSVPAG00000004709
I
0.000
FUBP1
Tursiops truncatus
ENSTTRG00000000096
I
0.000
FUBP1
Tarsius syrichta
ENSTSYG00000000148
I
0.000
ENSTRUG00000004615
Takifugu rubripes
ENSTRUG00000004615
I
0.000
FUBP1
Taeniopygia guttata
ENSTGUG00000006841
I
0.000
AAN77161
Xenopus laevis
AAN77161
I
0.000
FUBP1
Spermophilus tridecemlineatus
ENSSTOG00000014312
I
0.000
FUBP1
Loxodonta africana
ENSLAFG00000003273
I
0.000
FUBP1
Gorilla gorilla
ENSGGOG00000027554
I
0.000
FUBP1
Equus caballus
ENSECAG00000010867
I
0.000
FUBP1
Homo sapiens
ENSG00000162613
I
0.000
fubp1
Danio rerio
ENSDARG00000029248
I
0.000
FUBP1
Cavia porcellus
ENSCPOG00000002757
I
0.000
Fubp1
Dipodomys ordii
ENSDORG00000016534
I
0.000
FUBP1
Callithrix jacchus
ENSCJAG00000007062
I
0.000
FUBP1
Choloepus hoffmanni
ENSCHOG00000008177
I
0.000
ENSGACG00000016563
Gasterosteus aculeatus
ENSGACG00000016563
I
0.000
FUBP1
Canis familiaris
ENSCAFG00000020361
I
0.000
FUBP1
Anolis carolinensis
ENSACAG00000006310
I
0.000
Q5ZHW0_CHICK
Gallus gallus
ENSGALG00000008939
I
0.000
Q08DJ3_BOVIN
Bos taurus
ENSBTAG00000008926
I
0.000
Ame_R003042
Ailuropoda melanoleuca
Ame_R003042
N
0.000
FUBP3
Dasypus novemcinctus
ENSDNOG00000014533
N
0.000
FUBP3
Taeniopygia guttata
ENSTGUG00000004662
N
0.000
FUBP3
Sus scrofa
ENSSSCG00000005702
N
0.000
FUBP3
Oryzias latipes
ENSORLG00000017565
N
0.000
ENSDARG00000007049
Danio rerio
ENSDARG00000007049
N
0.000
FUBP3
Tetraodon nigroviridis
ENSTNIG00000005858
N
0.000
FUBP3
Tetraodon nigroviridis
ENSTNIG00000009019
N
0.000
FUBP3
Takifugu rubripes
ENSTRUG00000013259
N
0.000
FUBP3
Takifugu rubripes
ENSTRUG00000018658
N
0.000
AAH60400
Xenopus laevis
AAH60400
N
0.000
A6QP83_BOVIN
Bos taurus
ENSBTAG00000013072
N
0.000
FUBP3
Canis familiaris
ENSCAFG00000019942
N
0.000
fubp3
Xenopus tropicalis
ENSXETG00000001344
N
0.000
LOC100399862
Callithrix jacchus
ENSCJAG00000020542
N
0.000
Fubp3
Rattus norvegicus
ENSRNOG00000009139
N
0.000
FUBP3
Pteropus vampyrus
ENSPVAG00000001510
N
0.000
FUBP3
Gasterosteus aculeatus
ENSGACG00000000957
N
0.000
FUBP3
Ornithorhynchus anatinus
ENSOANG00000001042
N
0.000
Fubp3
Mus musculus
ENSMUSG00000026843
N
0.000
FUBP3
Monodelphis domestica
ENSMODG00000012105
N
0.000
FUBP3
Macaca mulatta
ENSMMUG00000008249
N
0.000
FUBP3
Gasterosteus aculeatus
ENSGACG00000016704
N
0.000
Q5ZM76_CHICK
Gallus gallus
ENSGALG00000003941
N
0.000
FUBP3
Microcebus murinus
ENSMICG00000015452
N
0.000
FUBP3
Gorilla gorilla
ENSGGOG00000011318
N
0.000
FUBP3
Cavia porcellus
ENSCPOG00000010315
N
0.000
FUBP3
Otolemur garnettii
ENSOGAG00000007555
N
0.000
FUBP3
Homo sapiens
ENSG00000107164
N
0.000
FUBP3
Pan troglodytes
ENSPTRG00000021474
N
0.000
ENSPPYG00000019693
Pongo pygmaeus
ENSPPYG00000019693
N
0.000
LOC100069755
Equus caballus
ENSECAG00000011500
N
0.000
FUBP3
Myotis lucifugus
ENSMLUG00000008743
N
0.000
FUBP3
Procavia capensis
ENSPCAG00000001717
N
0.000
FUBP3
Oryzias latipes
ENSORLG00000007103
N
0.000
FUBP3
Felis catus
ENSFCAG00000005113
N
0.000
FUBP3
Ochotona princeps
ENSOPRG00000008648
N
0.000
FUBP1
Ochotona princeps
ENSOPRG00000001175
N
0.000
FUBP3
Loxodonta africana
ENSLAFG00000011611
N
0.000