CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Glyma17g04270.1
(
Glycine max
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
Glyma17g04270.1
T62408_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Glyma17g04270.1
YTH
187
277
LFFSVNASGQFCGVAEMIGPVDFNKDMDFWQQDKWSGSFPVKWHIIKDVPNANFRHIILENNENKPVTNSRDTQEIMYSKGLEMLKIFKNH
Links
Other
YTH
family RBPs
Other
Glycine max
RBPs
201 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
29889.m003364
Ricinus communis
29889.m003364
N
0.901
29955.m001158
Ricinus communis
29955.m001158
N
0.824
B9HI18_POPTR
Populus trichocarpa
POPTR_0008s08030
N
0.802
B9HII9_POPTR
Populus trichocarpa
POPTR_0008s09960
N
0.901
B9HX84_POPTR
Populus trichocarpa
POPTR_0010s16210
N
0.890
B9HYD4_POPTR
Populus trichocarpa
POPTR_0010s18300
N
0.791
BGIOSIBCE003171
Oryza indica
BGIOSIBCE003171
N
0.824
BGIOSIBCE010884
Oryza indica
BGIOSIBCE010884
N
0.835
BRADI1G64100
Brachypodium distachyon
BRADI1G64100
N
0.824
BRADI2G46590
Brachypodium distachyon
BRADI2G46590
N
0.824
cassava16277.m1
Manihot esculenta
cassava16277.m1
N
0.000
cassava17771.valid.m1
Manihot esculenta
cassava17771.valid.m1
N
0.824
cassava17772.valid.m1
Manihot esculenta
cassava17772.valid.m1
N
0.824
cassava42992.valid.m1
Manihot esculenta
cassava42992.valid.m1
N
0.934
cassava42993.valid.m1
Manihot esculenta
cassava42993.valid.m1
N
0.934
chr6.LjT36O06.80.nd
Lotus japonicus
chr6.LjT36O06.80.nd
N
0.956
Cucsa.135220
Cucumis sativus
Cucsa.135220
N
0.901
ECT5
Arabidopsis thaliana
AT3G13060-TAIR-G
N
0.802
ECT6
Arabidopsis thaliana
AT3G17330-TAIR-G
N
0.824
ECT7
Arabidopsis thaliana
AT1G48110-TAIR-G
N
0.857
Glyma07g36110.1
Glycine max
Glyma07g36110.1
N
0.978
Glyma09g03590.1
Glycine max
Glyma09g03590.1
N
0.912
Glyma15g14490.1
Glycine max
Glyma15g14490.1
N
0.912
GRMZM2G127780
Zea mays
GRMZM2G127780
N
0.824
GRMZM2G169116
Zea mays
GRMZM2G169116
N
0.824
GSVIVG00017649001
Vitis vinifera
GSVIVG00017649001
N
0.934
GSVIVG00036696001
Vitis vinifera
GSVIVG00036696001
N
0.813
LjSGA_011466.1
Lotus japonicus
LjSGA_011466.1
N
0.780
LOC_Os01g48790
Oryza sativa
LOC_Os01g48790
N
0.824
LOC_Os03g20180
Oryza sativa
LOC_Os03g20180
N
0.835
MDP0000132385
Malus x domestica
MDP0000132385
N
0.912
MDP0000171737
Malus x domestica
MDP0000171737
N
0.824
MDP0000199885
Malus x domestica
MDP0000199885
N
0.769
MDP0000231231
Malus x domestica
MDP0000231231
N
0.835
MDP0000286471
Malus x domestica
MDP0000286471
N
0.835
MDP0000299155
Malus x domestica
MDP0000299155
N
0.000
MDP0000306387
Malus x domestica
MDP0000306387
N
0.912
Medtr2g036990
Medicago truncatula
Medtr2g036990
N
0.967
Medtr8g134440
Medicago truncatula
Medtr8g134440
N
0.945
mgf014143m
Mimulus guttatus
mgf014143m
N
0.890
mgf015583m
Mimulus guttatus
mgf015583m
N
0.890
mgf017987m
Mimulus guttatus
mgf017987m
N
0.890
PDK_20s1352821g002
Phoenix dactylifera
PDK_20s1352821g002
N
0.890
PDK_20s1441394g001
Phoenix dactylifera
PDK_20s1441394g001
N
0.714
PDK_20s1906441g001
Phoenix dactylifera
PDK_20s1906441g001
N
0.758
PK02315.1
Cannabis sativa
PK02315.1
N
0.879
PK23104.1
Cannabis sativa
PK23104.1
N
0.824
ppa003664m
Prunus persica
ppa003664m
N
0.846
ppa018635m
Prunus persica
ppa018635m
N
0.945
SB03G031190
Sorghum bicolor
Sb03g031190
N
0.824
XM_002885156.1
Arabidopsis lyrata
Al_scaffold_0003_1823
N
0.835
XM_002894050.1
Arabidopsis lyrata
fgenesh2_kg.1__3903__AT1G48110.2
N
0.857