Glyma17g04270.1 (Glycine max)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 Glyma17g04270.1 T62408_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma17g04270.1 YTH 187 277

Links

Other YTH family RBPs
Other Glycine max RBPs

201 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29889.m003364 Ricinus communis 29889.m003364 N 0.901
29955.m001158 Ricinus communis 29955.m001158 N 0.824
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.802
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.901
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.890
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.791
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.824
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.835
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.824
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.824
cassava16277.m1 Manihot esculenta cassava16277.m1 N 0.000
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.824
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.824
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.934
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.934
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.956
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.901
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.802
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.824
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.857
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.978
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.912
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.912
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.824
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.824
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.934
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.813
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.780
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.824
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.835
MDP0000132385 Malus x domestica MDP0000132385 N 0.912
MDP0000171737 Malus x domestica MDP0000171737 N 0.824
MDP0000199885 Malus x domestica MDP0000199885 N 0.769
MDP0000231231 Malus x domestica MDP0000231231 N 0.835
MDP0000286471 Malus x domestica MDP0000286471 N 0.835
MDP0000299155 Malus x domestica MDP0000299155 N 0.000
MDP0000306387 Malus x domestica MDP0000306387 N 0.912
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.967
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.945
mgf014143m Mimulus guttatus mgf014143m N 0.890
mgf015583m Mimulus guttatus mgf015583m N 0.890
mgf017987m Mimulus guttatus mgf017987m N 0.890
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.890
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.714
PDK_20s1906441g001 Phoenix dactylifera PDK_20s1906441g001 N 0.758
PK02315.1 Cannabis sativa PK02315.1 N 0.879
PK23104.1 Cannabis sativa PK23104.1 N 0.824
ppa003664m Prunus persica ppa003664m N 0.846
ppa018635m Prunus persica ppa018635m N 0.945
SB03G031190 Sorghum bicolor Sb03g031190 N 0.824
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.835
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.857