ENSCJAG00000031552 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000031552 T35709_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.971
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.971
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.971
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.950
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.793
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000015019 RRM 16 85
ENSCJAP00000015019 RRM 107 176

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

319 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.971
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.865
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.957
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.850
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.971
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.740
LOC781499 Bos taurus ENSBTAG00000021580 I 0.844
LOC785445 Bos taurus ENSBTAG00000025621 I 0.922
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.950
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.747
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.785
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.794
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.964
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.900
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.872
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.762
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.797
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.908
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.964
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.901
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.810
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.887
ENSCJAG00000015222 Callithrix jacchus ENSCJAG00000015222 I 0.724
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.908
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.901
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.971
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.864
ENSCJAG00000032970 Callithrix jacchus ENSCJAG00000032970 I 0.816
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.894
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.907
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.879
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.943
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.844
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.887
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.844
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.971
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.971
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.872
ENSCAFG00000024636 Canis familiaris ENSCAFG00000024636 I 0.717
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.936
ENSCAFG00000024812 Canis familiaris ENSCAFG00000024812 I 0.768
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.831
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.846
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.858
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.936
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.792
ENSCAFG00000018580 Canis familiaris ENSCAFG00000018580 I 0.731
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.759
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.796
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.785
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.900
ENSCAFG00000006386 Canis familiaris ENSCAFG00000006386 I 0.718
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.971
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.879
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.776
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.936
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.851
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.839
ENSCAFG00000005307 Canis familiaris ENSCAFG00000005307 I 0.000
ENSCAFG00000000746 Canis familiaris ENSCAFG00000000746 I 0.736
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.845
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.872
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.838
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.769
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.845
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.859
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.858
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.867
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.753
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.880
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.858
ENSCAFG00000016707 Canis familiaris ENSCAFG00000016707 I 0.754
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.823
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.766
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.852
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.852
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.873
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.821
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.858
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.804
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.888
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.779
ENSCAFG00000009606 Canis familiaris ENSCAFG00000009606 I 0.733
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.957
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.901
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.766
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.844
ENSCAFG00000013932 Canis familiaris ENSCAFG00000013932 I 0.754
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.844
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.943
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.844
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.829
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.793
zgc:66127 Danio rerio ENSDARG00000011020 I 0.800
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.844
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.971
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.879
ENSETEG00000001872 Echinops telfairi ENSETEG00000001872 I 0.750
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.879
LOC100066794 Equus caballus ENSECAG00000023237 I 0.843
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.971
LOC100054206 Equus caballus ENSECAG00000006699 I 0.880
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.921
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.957
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.816
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.823
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.843
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.971
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.843
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.879
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.789
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.779
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.865
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.858
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.957
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.872
ENSGGOG00000022797 Gorilla gorilla ENSGGOG00000022797 I 0.705
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.771
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.844
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.971
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.759
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.971
HNRNPA3 Homo sapiens ENSG00000170144 I 0.844
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.950
HNRNPA1 Homo sapiens ENSG00000135486 D 0.971
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.921
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.964
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.804
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.943
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.786
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.778
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.971
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.845
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.786
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.851
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.808
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.964
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.950
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.852
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.894
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.950
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.964
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.887
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.759
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.759
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.772
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.844
ENSMMUG00000022219 Macaca mulatta ENSMMUG00000022219 I 0.710
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.844
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.929
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.843
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.838
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.754
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.845
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.844
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.836
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.943
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.971
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.844
Gm8991 Mus musculus ENSMUSG00000059179 I 0.843
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.844
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.957
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.880
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.971
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.964
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.957
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.971
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.964
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.957
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.943
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.901
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.964
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.957
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.936
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.837
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.957
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.971
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.782
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.864
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.772
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.950
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.971
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.971
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.971
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.771
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.971
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.844
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.929
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.757
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.801
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.766
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.801
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.843
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.844
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.971
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.821
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.781
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.915
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.971
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.836
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.936
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.789
ENSRNOG00000031316 Rattus norvegicus ENSRNOG00000031316 I 0.741
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.936
D3ZQR9_RAT Rattus norvegicus ENSRNOG00000027605 I 0.729
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.844
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.782
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.914
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.879
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.872
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.921
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.830
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.894
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.844
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.793
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.879
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.879
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.844
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.971
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.830
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.843
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.836
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.821
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.971
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.894
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.922
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.844
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.971
CBF67578 Xenopus laevis CBF67578 I 0.831
CBF67672 Xenopus laevis CBF67672 I 0.893
CBU92428 Xenopus laevis CBU92428 I 0.879
CBU92451 Xenopus laevis CBU92451 I 0.831
CBU92546 Xenopus laevis CBU92546 I 0.893
P17130 Xenopus laevis P17130 I 0.879
P51968 Xenopus laevis P51968 I 0.850
CBF67555 Xenopus laevis CBF67555 I 0.879
AAI69881 Xenopus laevis AAI69881 I 0.831
AAH72090 Xenopus laevis AAH72090 I 0.893
AAH45260 Xenopus laevis AAH45260 I 0.893
AAA49950 Xenopus laevis AAA49950 I 0.831
AAA49949 Xenopus laevis AAA49949 I 0.850
AAA49742 Xenopus laevis AAA49742 I 0.879
AAA49741 Xenopus laevis AAA49741 I 0.879
P51992 Xenopus laevis P51992 I 0.831
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.900
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.850