ENSLAFG00000026657 (Loxodonta africana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSLAFG00000026657 T38113_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.971
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.971
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.971
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.950
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.807
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000027870 RRM 16 85
ENSLAFP00000027870 RRM 107 176

Links

Other RRM family RBPs
Other Loxodonta africana RBPs

321 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AB02963.1 Alternaria brassicicola AB02963.1 N 0.000
ARB_03747 Arthroderma benhamiae ARB_03747 N 0.000
e_gw1.00866.790.1 Aspergillus carbonarius e_gw1.00866.790.1 N 0.000
ACLA_036560 Aspergillus clavatus CADACLAG00003885 N 0.000
AFLA_086540 Aspergillus flavus CADAFLAG00001433 N 0.000
AFUA_3G08580 Aspergillus fumigatus CADAFUAG00005852 N 0.000
ANIA_02989 Aspergillus nidulans CADANIAG00010091 N 0.000
An02g12270 Aspergillus niger CADANGAG00002750 N 0.000
AO090005001419 Aspergillus oryzae CADAORAG00003299 N 0.000
ATEG_01614 Aspergillus terreus CADATEAG00002872 N 0.000
BDBG_01954 Blastomyces dermatitidis BDBG_01954 N 0.000
CIMG_07653 Coccidioides immitis CIMG_07653 N 0.000
CPSG_09452 Coccidioides posadasii CPSG_09452 N 0.000
estExt_Genewise1Plus.C_31070 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_31070 N 0.000
MCYG_06115 Microsporum canis MCYG_06115 N 0.000
MGYG_01973 Microsporum gypseum MGYG_01973 N 0.000
estExt_Genewise1Plus.C_70764 Mycosphaerella fijiensis estExt_Genewise1Plus.C_70764 N 0.000
estExt_fgenesh1_kg.C_chr_50164 Mycosphaerella graminicola estExt_fgenesh1_kg.C_chr_50164 N 0.000
NFIA_068550 Neosartorya fischeri CADNFIAG00006348 N 0.000
PABG_01590 Paracoccidioides brasiliensis PABG_01590 N 0.000
Pc06g01290 Penicillium chrysogenum Pc06g01290 N 0.000
Pc20g03510 Penicillium chrysogenum Pc20g03510 N 0.000
PMAA_013050 Penicillium marneffei PMAA_013050 N 0.000
PTRG_07976 Pyrenophora tritici repentis PTRG_07976 N 0.000
SNOG_04431 Stagonospora nodorum SNOG_04431 N 0.000
estExt_Genewise1Plus.C_12858 Trichoderma atroviride estExt_Genewise1Plus.C_12858 N 0.000
TESG_06069 Trichophyton tonsurans TESG_06069 N 0.000
GSTUMT00008723001 Tuber melanosporum GSTUMT00008723001 N 0.000
UREG_07630 Uncinocarpus reesii UREG_07630 N 0.000
VDAG_03252 Verticillium dahliae VDAG_03252 N 0.000