CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSLAFG00000026657
(
Loxodonta africana
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSLAFG00000026657
T38113_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA1
M312_0.6
Homo sapiens
Sequence logo not available
UAGGGW
RIP-chip
Cook et al.(2011)
560_17925491
0.971
HNRNPA1
M271_0.6
Homo sapiens
UAGGGW
SELEX
Cook et al.(2011)
23_7510636
0.971
HNRNPA1
M022_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00022
0.971
HNRNPA1L2
M023_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00023
0.950
HNRNPA2B1
M024_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00024
0.807
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLAFP00000027870
RRM
16
85
LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSTVEEVDAAMNARPHKVDGRVVE
ENSLAFP00000027870
RRM
107
176
IFVGGIKEDTEEHHLRHYFEQYGKIEVIEIMTDQGSGKKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCE
Links
Other
RRM
family RBPs
Other
Loxodonta africana
RBPs
321 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ACR046W
Ashbya gossypii
ACR046W
N
0.000
CAGL0E06534g
Candida glabrata
CAGL0E06534g
N
0.000
KLLA0E13685g
Kluyveromyces lactis
KLLA0E13685g
N
0.000
KLTH0G07612g
Kluyveromyces thermotolerans
KLTH0G07612g
N
0.000
Kwal_2861
Kluyveromyces waltii
Kwal_2861
N
0.000
NOP9
Saccharomyces cerevisiae
YJL010C
N
0.000
12269_YJL010C
Saccharomyces paradoxus
12269_YJL010C
N
0.000
A7TH34_VANPO
Vanderwaltozyma polyspora
A7TH34_VANPO
N
0.000