ENSLAFG00000026657 (Loxodonta africana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSLAFG00000026657 T38113_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.971
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.971
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.971
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.950
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.807
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000027870 RRM 16 85
ENSLAFP00000027870 RRM 107 176

Links

Other RRM family RBPs
Other Loxodonta africana RBPs

321 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ACR046W Ashbya gossypii ACR046W N 0.000
CAGL0E06534g Candida glabrata CAGL0E06534g N 0.000
KLLA0E13685g Kluyveromyces lactis KLLA0E13685g N 0.000
KLTH0G07612g Kluyveromyces thermotolerans KLTH0G07612g N 0.000
Kwal_2861 Kluyveromyces waltii Kwal_2861 N 0.000
NOP9 Saccharomyces cerevisiae YJL010C N 0.000
12269_YJL010C Saccharomyces paradoxus 12269_YJL010C N 0.000
A7TH34_VANPO Vanderwaltozyma polyspora A7TH34_VANPO N 0.000