CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ROA1_MACMU
(
Macaca mulatta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMMUG00000031613
T39017_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA1
M271_0.6
Homo sapiens
UAGGGW
SELEX
Cook et al.(2011)
23_7510636
0.979
HNRNPA1
M022_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00022
0.979
HNRNPA1
M312_0.6
Homo sapiens
Sequence logo not available
UAGGGW
RIP-chip
Cook et al.(2011)
560_17925491
0.979
HNRNPA1L2
M023_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00023
0.957
HNRNPA2B1
M024_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00024
0.793
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMMUP00000038815
RRM
16
85
LFIGGLSFETTDESLRSHFEQWGTLTDCVAMRDPNTKRSRGFRFVTYATVEEVDAAMNARPHKVDGRVVE
ENSMMUP00000038815
RRM
107
176
IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNCE
ENSMMUP00000038816
RRM
16
85
LFIGGLSFETTDESLRSHFEQWGTLTDCVAMRDPNTKRSRGFRFVTYATVEEVDAAMNARPHKVDGRVVE
ENSMMUP00000038816
RRM
107
176
IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNCE
Links
Other
RRM
family RBPs
Other
Macaca mulatta
RBPs
324 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
HNRNPA2B1
Homo sapiens
ENSG00000122566
D
0.731
HNRNPA2B1
Tupaia belangeri
ENSTBEG00000003219
I
0.000
ENSSTOG00000009092
Spermophilus tridecemlineatus
ENSSTOG00000009092
I
0.710
ENSSTOG00000006202
Spermophilus tridecemlineatus
ENSSTOG00000006202
I
0.731
ENSSSCG00000016710
Sus scrofa
ENSSSCG00000016710
I
0.000
ENSSSCG00000015836
Sus scrofa
ENSSSCG00000015836
I
0.717
ENSSSCG00000013607
Sus scrofa
ENSSSCG00000013607
I
0.000
ENSSSCG00000013557
Sus scrofa
ENSSSCG00000013557
I
0.000
ENSSSCG00000012503
Sus scrofa
ENSSSCG00000012503
I
0.000
D4A1X0_RAT
Rattus norvegicus
ENSRNOG00000021254
I
0.707
Hnrnpa2b1
Rattus norvegicus
ENSRNOG00000011175
I
0.731
HNRNPA2B1
Pteropus vampyrus
ENSPVAG00000006296
I
0.731
P51990
Xenopus laevis
P51990
I
0.710
HNRNPA2B1
Taeniopygia guttata
ENSTGUG00000002869
I
0.738
HNRNPA2B1
Tursiops truncatus
ENSTTRG00000000709
I
0.731
P51989
Xenopus laevis
P51989
I
0.724
CBU92450
Xenopus laevis
CBU92450
I
0.724
CBF67577
Xenopus laevis
CBF67577
I
0.724
AAI06633
Xenopus laevis
AAI06633
I
0.710
AAH46692
Xenopus laevis
AAH46692
I
0.724
AAH43750
Xenopus laevis
AAH43750
I
0.710
AAB59951
Xenopus laevis
AAB59951
I
0.710
AAA49948
Xenopus laevis
AAA49948
I
0.724
Ame_R000626
Ailuropoda melanoleuca
Ame_R000626
I
0.731
hnrnpa2b1
Xenopus tropicalis
ENSXETG00000012170
I
0.710
HNRNPA2B1
Vicugna pacos
ENSVPAG00000010417
I
0.000
HNRNPA2B1
Pan troglodytes
ENSPTRG00000019002
I
0.731
ENSPPYG00000017715
Pongo pygmaeus
ENSPPYG00000017715
I
0.731
HNRNPA2B1
Oryctolagus cuniculus
ENSOCUG00000026859
I
0.731
Hnrnpa2b1
Dipodomys ordii
ENSDORG00000005482
I
0.731
HNRNPA2B1
Dasypus novemcinctus
ENSDNOG00000012928
I
0.731
ENSCJAG00000021872
Callithrix jacchus
ENSCJAG00000021872
I
0.731
LOC100401647
Callithrix jacchus
ENSCJAG00000007908
I
0.731
HNRNPA2B1
Choloepus hoffmanni
ENSCHOG00000013832
I
0.724
HNRNPA2B1
Canis familiaris
ENSCAFG00000002885
I
0.731
LOC538435
Bos taurus
ENSBTAG00000038680
I
0.000
ENSBTAG00000020849
Bos taurus
ENSBTAG00000020849
I
0.000
ENSBTAG00000011195
Bos taurus
ENSBTAG00000011195
I
0.000
ROA2_BOVIN
Bos taurus
ENSBTAG00000005726
I
0.731
LOC516616
Bos taurus
ENSBTAG00000002284
I
0.000
LOC100068539
Equus caballus
ENSECAG00000000782
I
0.731
HNRNPA2B1
Echinops telfairi
ENSETEG00000018577
I
0.731
HNRNPA2B1
Ornithorhynchus anatinus
ENSOANG00000009159
I
0.731
Hnrnpa2b1
Mus musculus
ENSMUSG00000004980
I
0.731
HNRNPA2B1
Monodelphis domestica
ENSMODG00000000603
I
0.731
HNRNPA2B1
Macaca mulatta
ENSMMUG00000003619
I
0.731
HNRNPA2B1
Myotis lucifugus
ENSMLUG00000007578
I
0.731
HNRNPA2B1
Meleagris gallopavo
ENSMGAG00000010635
I
0.731
ENSMEUG00000014479
Macropus eugenii
ENSMEUG00000014479
I
0.731
ENSMEUG00000001084
Macropus eugenii
ENSMEUG00000001084
I
0.731
HNRNPA2B1
Loxodonta africana
ENSLAFG00000006902
I
0.731
HNRNPA2B1
Gorilla gorilla
ENSGGOG00000017072
I
0.731
Q5ZME1_CHICK
Gallus gallus
ENSGALG00000011036
I
0.731
HNRNPA2B1
Anolis carolinensis
ENSACAG00000012992
I
0.724