LOC100409067 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000003245 T35491_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.979
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.979
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.979
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.957
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.800
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000005906 RRM 16 85
ENSCJAP00000005906 RRM 107 176
ENSCJAP00000005910 RRM 16 85
ENSCJAP00000005910 RRM 107 176

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

323 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.957
HNRNPA1 Homo sapiens ENSG00000135486 D 0.979
HNRNPA2B1 Homo sapiens ENSG00000122566 D 0.738
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.943
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.979
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.936
ENSPPYG00000017715 Pongo pygmaeus ENSPPYG00000017715 I 0.738
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.809
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.789
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.871
HNRNPA2B1 Ochotona princeps ENSOPRG00000011698 I 0.000
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.971
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.786
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.851
HNRNPA2B1 Pan troglodytes ENSPTRG00000019002 I 0.738
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.851
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.901
D4A1X0_RAT Rattus norvegicus ENSRNOG00000021254 I 0.714
Hnrnpa2b1 Rattus norvegicus ENSRNOG00000011175 I 0.738
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.921
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.851
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.851
HNRNPA2B1 Pteropus vampyrus ENSPVAG00000006296 I 0.738
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.979
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.979
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.979
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.979
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.957
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.753
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.851
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.979
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.950
Hnrnpa2b1 Mus musculus ENSMUSG00000004980 I 0.738
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.852
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.851
HNRNPA2B1 Monodelphis domestica ENSMODG00000000603 I 0.738
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.957
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.971
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.801
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.793
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.979
Gm8991 Mus musculus ENSMUSG00000059179 I 0.850
HNRNPA2B1 Ornithorhynchus anatinus ENSOANG00000009159 I 0.738
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.964
HNRNPA2B1 Oryctolagus cuniculus ENSOCUG00000026859 I 0.738
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.979
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.971
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.964
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.950
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.979
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.964
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.943
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.979
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.964
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.844
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.799
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.843
P51992 Xenopus laevis P51992 I 0.838
AAH72090 Xenopus laevis AAH72090 I 0.900
AAH46692 Xenopus laevis AAH46692 I 0.731
AAH45260 Xenopus laevis AAH45260 I 0.900
AAH43750 Xenopus laevis AAH43750 I 0.717
AAB59951 Xenopus laevis AAB59951 I 0.717
AAA49950 Xenopus laevis AAA49950 I 0.838
AAA49949 Xenopus laevis AAA49949 I 0.850
AAA49948 Xenopus laevis AAA49948 I 0.731
AAA49742 Xenopus laevis AAA49742 I 0.886
AAA49741 Xenopus laevis AAA49741 I 0.886
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.979
Ame_R000626 Ailuropoda melanoleuca Ame_R000626 I 0.738
AAI06633 Xenopus laevis AAI06633 I 0.717
AAI69881 Xenopus laevis AAI69881 I 0.838
P51990 Xenopus laevis P51990 I 0.717
P51989 Xenopus laevis P51989 I 0.731
P51968 Xenopus laevis P51968 I 0.850
P17130 Xenopus laevis P17130 I 0.886
CBU92546 Xenopus laevis CBU92546 I 0.900
CBU92451 Xenopus laevis CBU92451 I 0.838
CBU92450 Xenopus laevis CBU92450 I 0.731
CBU92428 Xenopus laevis CBU92428 I 0.886
CBF67672 Xenopus laevis CBF67672 I 0.900
CBF67578 Xenopus laevis CBF67578 I 0.838
CBF67577 Xenopus laevis CBF67577 I 0.731
CBF67555 Xenopus laevis CBF67555 I 0.886
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.907
hnrnpa2b1 Xenopus tropicalis ENSXETG00000012170 I 0.717
ENSSSCG00000016710 Sus scrofa ENSSSCG00000016710 I 0.000
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.851
ENSSSCG00000015836 Sus scrofa ENSSSCG00000015836 I 0.724
ENSSSCG00000013607 Sus scrofa ENSSSCG00000013607 I 0.000
ENSSSCG00000013561 Sus scrofa ENSSSCG00000013561 I 0.000
ENSSSCG00000013557 Sus scrofa ENSSSCG00000013557 I 0.000
ENSSSCG00000012503 Sus scrofa ENSSSCG00000012503 I 0.000
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.979
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.886
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.943
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.843
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.979
ENSSTOG00000006202 Spermophilus tridecemlineatus ENSSTOG00000006202 I 0.738
ENSSTOG00000009092 Spermophilus tridecemlineatus ENSSTOG00000009092 I 0.717
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.857
HNRNPA2B1 Vicugna pacos ENSVPAG00000010417 I 0.000
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.851
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.979
HNRNPA2B1 Tursiops truncatus ENSTTRG00000000709 I 0.738
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.843
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.829
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.850
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.745
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.929
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.979
HNRNPA2B1 Tupaia belangeri ENSTBEG00000003219 I 0.000
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.923
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.979
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.936
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.880
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.888
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.859
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.859
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.772
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.830
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.887
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.821
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.851
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.772
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.853
HNRNPA2B1 Choloepus hoffmanni ENSCHOG00000013832 I 0.731
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.894
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.979
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.908
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.907
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.957
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.801
LOC100401647 Callithrix jacchus ENSCJAG00000007908 I 0.738
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.818
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.915
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.971
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.894
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.901
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.964
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.806
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.796
LOC538435 Bos taurus ENSBTAG00000038680 I 0.000
LOC785445 Bos taurus ENSBTAG00000025621 I 0.922
LOC781499 Bos taurus ENSBTAG00000021580 I 0.851
ENSBTAG00000020849 Bos taurus ENSBTAG00000020849 I 0.000
ENSBTAG00000011195 Bos taurus ENSBTAG00000011195 I 0.000
ROA2_BOVIN Bos taurus ENSBTAG00000005726 I 0.738
LOC516616 Bos taurus ENSBTAG00000002284 I 0.000
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.979
HNRNPA2B1 Anolis carolinensis ENSACAG00000012992 I 0.731
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.857
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.866
HNRNPA2B1 Canis familiaris ENSCAFG00000002885 I 0.738
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.859
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.779
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.804
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.874
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.943
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.979
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.907
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.792
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.853
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.943
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.866
ENSCAFG00000003921 Canis familiaris ENSCAFG00000003921 I 0.731
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.964
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.807
ENSMEUG00000014479 Macropus eugenii ENSMEUG00000014479 I 0.738
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.851
ENSMEUG00000001084 Macropus eugenii ENSMEUG00000001084 I 0.738
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.929
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.971
HNRNPA2B1 Loxodonta africana ENSLAFG00000006902 I 0.738
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.793
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.964
HNRNPA2B1 Gorilla gorilla ENSGGOG00000017072 I 0.738
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.851
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.979
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.936
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.850
HNRNPA2B1 Meleagris gallopavo ENSMGAG00000010635 I 0.738
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.957
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.971
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.894
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.759
HNRNPA2B1 Macaca mulatta ENSMMUG00000003619 I 0.738
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.851
HNRNPA2B1 Myotis lucifugus ENSMLUG00000007578 I 0.738
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.851
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.964
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.887
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.979
Q5ZME1_CHICK Gallus gallus ENSGALG00000011036 I 0.738
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.850
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.886
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.851
HNRNPA2B1 Dasypus novemcinctus ENSDNOG00000012928 I 0.738
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.979
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.800
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.950
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.851
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.851
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.979
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.914
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.950
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.950
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.851
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.886
LOC100068539 Equus caballus ENSECAG00000000782 I 0.738
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.979
HNRNPA3 Homo sapiens ENSG00000170144 I 0.851
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.850
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.979
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.950
HNRNPA2B1 Echinops telfairi ENSETEG00000018577 I 0.738
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.964
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.929
LOC100066794 Equus caballus ENSECAG00000023237 I 0.850
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.979
LOC100054206 Equus caballus ENSECAG00000006699 I 0.887
ENSCJAG00000021872 Callithrix jacchus ENSCJAG00000021872 I 0.738
HNRNPA2B1 Tarsius syrichta ENSTSYG00000008124 N 0.000