ENSOPRG00000006107 (Ochotona princeps)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOPRG00000006107 T39966_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.993
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.993
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.993
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.971
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.807
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOPRP00000005601 RRM 16 85
ENSOPRP00000005601 RRM 107 176

Links

Other RRM family RBPs
Other Ochotona princeps RBPs

325 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.993
Ame_R000626 Ailuropoda melanoleuca Ame_R000626 I 0.745
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.979
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.871
HNRNPA2B1 Anolis carolinensis ENSACAG00000012992 I 0.738
LOC538435 Bos taurus ENSBTAG00000038680 I 0.000
LOC785445 Bos taurus ENSBTAG00000025621 I 0.936
LOC781499 Bos taurus ENSBTAG00000021580 I 0.865
ENSBTAG00000020849 Bos taurus ENSBTAG00000020849 I 0.000
ENSBTAG00000011195 Bos taurus ENSBTAG00000011195 I 0.000
ROA2_BOVIN Bos taurus ENSBTAG00000005726 I 0.745
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.993
LOC516616 Bos taurus ENSBTAG00000002284 I 0.000
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.818
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.929
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.986
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.971
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.908
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.908
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.993
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.816
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.971
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.993
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.929
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.964
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.964
ENSCJAG00000021872 Callithrix jacchus ENSCJAG00000021872 I 0.745
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.993
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.922
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.921
LOC100401647 Callithrix jacchus ENSCJAG00000007908 I 0.745
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.865
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.834
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.950
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.993
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.921
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.806
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.860
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.950
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.880
ENSCAFG00000003921 Canis familiaris ENSCAFG00000003921 I 0.745
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.894
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.866
HNRNPA2B1 Canis familiaris ENSCAFG00000002885 I 0.745
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.866
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.803
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.888
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.818
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.865
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.844
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.786
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.880
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.873
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.895
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.887
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.950
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.793
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.806
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.979
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.786
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.867
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.915
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.865
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.865
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.964
HNRNPA2B1 Choloepus hoffmanni ENSCHOG00000013832 I 0.738
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.814
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.993
HNRNPA2B1 Dasypus novemcinctus ENSDNOG00000012928 I 0.745
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.865
Hnrnpa2b1 Dipodomys ordii ENSDORG00000005482 I 0.745
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.900
HNRNPA2B1 Echinops telfairi ENSETEG00000018577 I 0.745
LOC100066794 Equus caballus ENSECAG00000023237 I 0.864
LOC100054206 Equus caballus ENSECAG00000006699 I 0.901
LOC100068539 Equus caballus ENSECAG00000000782 I 0.745
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.993
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.943
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.979
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.864
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.993
Q5ZME1_CHICK Gallus gallus ENSGALG00000011036 I 0.745
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.864
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.900
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.979
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.993
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.800
HNRNPA2B1 Gorilla gorilla ENSGGOG00000017072 I 0.745
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.865
HNRNPA3 Homo sapiens ENSG00000170144 I 0.865
HNRNPA2B1 Homo sapiens ENSG00000122566 D 0.745
HNRNPA1 Homo sapiens ENSG00000135486 D 0.993
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.993
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.971
HNRNPA2B1 Loxodonta africana ENSLAFG00000006902 I 0.745
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.943
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.986
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.964
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.908
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.986
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.971
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.807
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.799
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.993
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.807
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.815
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.986
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.971
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.772
HNRNPA2B1 Macaca mulatta ENSMMUG00000003619 I 0.745
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.865
ENSMEUG00000001084 Macropus eugenii ENSMEUG00000001084 I 0.745
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.865
ENSMEUG00000014479 Macropus eugenii ENSMEUG00000014479 I 0.745
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.950
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.864
HNRNPA2B1 Meleagris gallopavo ENSMGAG00000010635 I 0.745
HNRNPA2B1 Monodelphis domestica ENSMODG00000000603 I 0.745
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.865
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.866
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.993
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.865
Gm8991 Mus musculus ENSMUSG00000059179 I 0.864
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.964
Hnrnpa2b1 Mus musculus ENSMUSG00000004980 I 0.745
HNRNPA2B1 Myotis lucifugus ENSMLUG00000007578 I 0.745
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.865
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.979
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.901
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.993
HNRNPA2B1 Ochotona princeps ENSOPRG00000011698 I 0.000
HNRNPA2B1 Ornithorhynchus anatinus ENSOANG00000009159 I 0.745
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.993
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.979
HNRNPA2B1 Oryctolagus cuniculus ENSOCUG00000026859 I 0.745
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.993
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.986
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.979
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.979
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.858
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.957
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.979
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.986
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.964
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.886
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.803
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.786
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.760
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.971
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.993
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.993
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.993
HNRNPA2B1 Pan troglodytes ENSPTRG00000019002 I 0.745
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.865
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.993
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.823
ENSPPYG00000017715 Pongo pygmaeus ENSPPYG00000017715 I 0.745
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.950
HNRNPA2B1 Pteropus vampyrus ENSPVAG00000006296 I 0.745
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.865
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.993
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.957
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.857
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.993
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.944
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.843
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.957
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.865
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.936
Hnrnpa2b1 Rattus norvegicus ENSRNOG00000011175 I 0.745
D4A1X0_RAT Rattus norvegicus ENSRNOG00000021254 I 0.721
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.915
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.865
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.900
ENSSTOG00000006202 Spermophilus tridecemlineatus ENSSTOG00000006202 I 0.745
ENSSTOG00000009092 Spermophilus tridecemlineatus ENSSTOG00000009092 I 0.724
ENSSSCG00000012503 Sus scrofa ENSSSCG00000012503 I 0.000
ENSSSCG00000016710 Sus scrofa ENSSSCG00000016710 I 0.000
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.865
ENSSSCG00000015836 Sus scrofa ENSSSCG00000015836 I 0.731
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.993
ENSSSCG00000013557 Sus scrofa ENSSSCG00000013557 I 0.000
ENSSSCG00000013561 Sus scrofa ENSSSCG00000013561 I 0.000
ENSSSCG00000013607 Sus scrofa ENSSSCG00000013607 I 0.000
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.752
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.864
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.857
HNRNPA2B1 Tarsius syrichta ENSTSYG00000008124 N 0.000
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.843
HNRNPA2B1 Tupaia belangeri ENSTBEG00000003219 I 0.000
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.993
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.943
HNRNPA2B1 Tursiops truncatus ENSTTRG00000000709 I 0.745
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.993
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.865
HNRNPA2B1 Vicugna pacos ENSVPAG00000010417 I 0.000
CBU92428 Xenopus laevis CBU92428 I 0.900
CBF67672 Xenopus laevis CBF67672 I 0.914
CBF67578 Xenopus laevis CBF67578 I 0.852
CBF67577 Xenopus laevis CBF67577 I 0.738
CBF67555 Xenopus laevis CBF67555 I 0.900
CBU92450 Xenopus laevis CBU92450 I 0.738
CBU92451 Xenopus laevis CBU92451 I 0.852
CBU92546 Xenopus laevis CBU92546 I 0.914
P17130 Xenopus laevis P17130 I 0.900
P51968 Xenopus laevis P51968 I 0.864
P51989 Xenopus laevis P51989 I 0.738
P51990 Xenopus laevis P51990 I 0.724
AAI69881 Xenopus laevis AAI69881 I 0.852
AAI06633 Xenopus laevis AAI06633 I 0.724
AAH72090 Xenopus laevis AAH72090 I 0.914
P51992 Xenopus laevis P51992 I 0.852
AAA49741 Xenopus laevis AAA49741 I 0.900
AAA49742 Xenopus laevis AAA49742 I 0.900
AAA49948 Xenopus laevis AAA49948 I 0.738
AAA49949 Xenopus laevis AAA49949 I 0.864
AAA49950 Xenopus laevis AAA49950 I 0.852
AAB59951 Xenopus laevis AAB59951 I 0.724
AAH43750 Xenopus laevis AAH43750 I 0.724
AAH45260 Xenopus laevis AAH45260 I 0.914
AAH46692 Xenopus laevis AAH46692 I 0.738
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.921
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.871
hnrnpa2b1 Xenopus tropicalis ENSXETG00000012170 I 0.724