LOC100397230 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000018864 T35660_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		1.000
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		1.000
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		1.000
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.979
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.814
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000035038 RRM 11 80
ENSCJAP00000035038 RRM 102 171

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

332 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HNRNPA1 Homo sapiens ENSG00000135486 D 1.000
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.979
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.971
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.929
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.993
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.986
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 1.000
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.964
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 1.000
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.986
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.865
Gm8991 Mus musculus ENSMUSG00000059179 I 0.871
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.986
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.993
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 1.000
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.872
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 1.000
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.957
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.871
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.893
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.993
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.793
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.979
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.986
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 1.000
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.872
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 1.000
LOC710473 Macaca mulatta ENSMMUG00000012989 I 1.000
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.806
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.979
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.993
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.915
ENSMMUG00000005993 Macaca mulatta ENSMMUG00000005993 I 0.787
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.779
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.872
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.872
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.986
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.873
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.814
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.971
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.873
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.872
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.863
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.922
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.880
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.979
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.993
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.822
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.879
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.908
P51992 Xenopus laevis P51992 I 0.859
AAA49742 Xenopus laevis AAA49742 I 0.907
AAA49741 Xenopus laevis AAA49741 I 0.907
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.894
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 1.000
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.929
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.879
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.872
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 1.000
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.864
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.871
AAA49949 Xenopus laevis AAA49949 I 0.871
AAA49950 Xenopus laevis AAA49950 I 0.859
AAH45260 Xenopus laevis AAH45260 I 0.921
P51968 Xenopus laevis P51968 I 0.871
P17130 Xenopus laevis P17130 I 0.907
CBU92546 Xenopus laevis CBU92546 I 0.921
CBU92451 Xenopus laevis CBU92451 I 0.859
CBU92428 Xenopus laevis CBU92428 I 0.907
CBF67672 Xenopus laevis CBF67672 I 0.921
CBF67578 Xenopus laevis CBF67578 I 0.859
CBF67555 Xenopus laevis CBF67555 I 0.907
AAI69881 Xenopus laevis AAI69881 I 0.859
AAH72090 Xenopus laevis AAH72090 I 0.921
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.950
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.922
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.872
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.922
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.858
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.943
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.901
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.908
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.943
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.872
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.872
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 1.000
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.964
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.850
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.944
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 1.000
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.894
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.872
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.858
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 1.000
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.907
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.821
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.964
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.864
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 1.000
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 1.000
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.929
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.852
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.957
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.894
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.902
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.880
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.880
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.850
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.879
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.901
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.841
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.874
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.887
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.979
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.812
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.894
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.936
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.993
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.979
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.894
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.915
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.838
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.915
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.879
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.872
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.923
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.887
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.873
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.866
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.901
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.873
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.810
LOC785445 Bos taurus ENSBTAG00000025621 I 0.943
LOC781499 Bos taurus ENSBTAG00000021580 I 0.872
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 1.000
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.879
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.957
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.866
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.986
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.812
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.895
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.878
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.957
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.908
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 1.000
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.929
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.867
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.887
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.986
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 1.000
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 1.000
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.871
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.907
ENSG00000215492 Homo sapiens ENSG00000215492 I 1.000
HNRNPA3 Homo sapiens ENSG00000170144 I 0.872
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.871
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 1.000
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.908
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.844
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.851
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.872
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.865
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.866
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.871
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.957
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.872
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.950
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.993
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.971
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.887
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.894
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.986
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.986
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.950
LOC100066794 Equus caballus ENSECAG00000023237 I 0.871
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.936
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.971
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.971
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.872
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.901
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 1.000
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.872
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.915
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.929
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.886
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 1.000
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 1.000
LOC100054206 Equus caballus ENSECAG00000006699 I 0.908
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.907
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.872
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 1.000
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.850
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.971
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.872
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.872
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.922
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.936