CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
HNRNPA1L2
(
Pan troglodytes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPTRG00000032520
T40812_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA1
M312_0.6
Homo sapiens
Sequence logo not available
UAGGGW
RIP-chip
Cook et al.(2011)
560_17925491
1.000
HNRNPA1
M271_0.6
Homo sapiens
UAGGGW
SELEX
Cook et al.(2011)
23_7510636
1.000
HNRNPA1
M022_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00022
1.000
HNRNPA1L2
M023_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00023
0.979
HNRNPA2B1
M024_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00024
0.814
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPTRP00000054640
RRM
16
85
LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVE
ENSPTRP00000054640
RRM
107
176
IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE
ENSPTRP00000054641
RRM
16
85
LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVE
ENSPTRP00000054641
RRM
107
176
IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE
Links
Other
RRM
family RBPs
Other
Pan troglodytes
RBPs
333 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ZGPAT_BOVIN
Bos taurus
ENSBTAG00000007498
N
0.000
ENSPPYG00000011246
Pongo pygmaeus
ENSPPYG00000011246
N
0.000
ZGPAT
Pan troglodytes
ENSPTRG00000013750
N
0.000
ZGPAT
Pteropus vampyrus
ENSPVAG00000013489
N
0.000
Lime1
Rattus norvegicus
ENSRNOG00000014235
N
0.000
ZGPAT
Spermophilus tridecemlineatus
ENSSTOG00000011986
N
0.000
ZGPAT
Tetraodon nigroviridis
ENSTNIG00000004165
N
0.000
ZGPAT
Takifugu rubripes
ENSTRUG00000010488
N
0.000
ZGPAT
Tursiops truncatus
ENSTTRG00000012223
N
0.000
Ame_R014267
Ailuropoda melanoleuca
Ame_R014267
N
0.000
AAH84897
Xenopus laevis
AAH84897
N
0.000
ZGPAT
Procavia capensis
ENSPCAG00000001883
N
0.000
ZGPAT
Otolemur garnettii
ENSOGAG00000004502
N
0.000
ZGPAT
Ornithorhynchus anatinus
ENSOANG00000004932
N
0.000
ZGPAT
Canis familiaris
ENSCAFG00000013056
N
0.000
ZGPAT
Callithrix jacchus
ENSCJAG00000010398
N
0.000
ZGPAT
Cavia porcellus
ENSCPOG00000014427
N
0.000
ZGPAT
Dasypus novemcinctus
ENSDNOG00000025874
N
0.000
ZGPAT
Felis catus
ENSFCAG00000001173
N
0.000
ZGPAT
Homo sapiens
ENSG00000197114
N
0.000
ZGPAT
Gorilla gorilla
ENSGGOG00000004801
N
0.000
LOC719499
Macaca mulatta
ENSMMUG00000000171
N
0.000
ZGPAT
Monodelphis domestica
ENSMODG00000017016
N
0.000
Zgpat
Mus musculus
ENSMUSG00000027582
N
0.000
Q5U4Z3
Xenopus laevis
Q5U4Z3
N
0.000