Ame_R011792 (Ailuropoda melanoleuca)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Ame_R011792 T55589_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		1.000
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		1.000
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		1.000
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.979
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.814
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Ame_R011792 RRM 11 80
Ame_R011792 RRM 106 175

Links

Other RRM family RBPs
Other Ailuropoda melanoleuca RBPs

332 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSBTAG00000012502 Bos taurus ENSBTAG00000012502 I 0.701
ENSCAFG00000024812 Canis familiaris ENSCAFG00000024812 I 0.789
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.810
ENSCAFG00000016707 Canis familiaris ENSCAFG00000016707 I 0.775
ENSCAFG00000013932 Canis familiaris ENSCAFG00000013932 I 0.775
ENSCAFG00000010467 Canis familiaris ENSCAFG00000010467 I 0.715
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.796
ENSCAFG00000006386 Canis familiaris ENSCAFG00000006386 I 0.739
XP_854259.1 Canis familiaris ENSCAFG00000009673 N 0.000
D3ZSC3_RAT Rattus norvegicus ENSRNOG00000027915 N 0.000
ENSMMUG00000017582 Macaca mulatta ENSMMUG00000017582 N 0.000
ENSETEG00000012394 Echinops telfairi ENSETEG00000012394 N 0.000
ENSETEG00000007429 Echinops telfairi ENSETEG00000007429 N 0.000
ENSCPOG00000020972 Cavia porcellus ENSCPOG00000020972 N 0.000
ENSBTAG00000012763 Bos taurus ENSBTAG00000012763 N 0.000
ENSCAFG00000017240 Canis familiaris ENSCAFG00000017240 N 0.000
ENSCAFG00000000389 Canis familiaris ENSCAFG00000000389 N 0.000
ENSCAFG00000017180 Canis familiaris ENSCAFG00000017180 N 0.000