LOC100397230 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000018864 T35660_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		1.000
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		1.000
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		1.000
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.979
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.814
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000035038 RRM 11 80
ENSCJAP00000035038 RRM 102 171

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

332 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA49741 Xenopus laevis AAA49741 I 0.907
AAA49742 Xenopus laevis AAA49742 I 0.907
AAH45260 Xenopus laevis AAH45260 I 0.921
AAH72090 Xenopus laevis AAH72090 I 0.921
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 1.000
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.894
CBF67555 Xenopus laevis CBF67555 I 0.907
CBF67672 Xenopus laevis CBF67672 I 0.921
CBU92428 Xenopus laevis CBU92428 I 0.907
CBU92546 Xenopus laevis CBU92546 I 0.921
D3ZQR9_RAT Rattus norvegicus ENSRNOG00000027605 I 0.757
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.943
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.964
D4AB76_RAT Rattus norvegicus ENSRNOG00000032584 I 0.743
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.795
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.922
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.986
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.760
ENSBTAG00000021755 Bos taurus ENSBTAG00000021755 I 0.724
ENSCAFG00000000746 Canis familiaris ENSCAFG00000000746 I 0.764
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.873
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.901
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.782
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.873
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.887
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.866
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.887
ENSCAFG00000005307 Canis familiaris ENSCAFG00000005307 I 0.703
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.867
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.812
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.796
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.957
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.878
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.895
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.774
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.800
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.812
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.986
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.923
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.793
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.872
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.841
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.901
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.850
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.793
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.880
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.769
ENSCAFG00000018580 Canis familiaris ENSCAFG00000018580 I 0.752
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.880
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.902
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.894
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.779
ENSCAFG00000024636 Canis familiaris ENSCAFG00000024636 I 0.745
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.852
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.874
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.915
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.915
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.894
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.936
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.825
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.789
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.894
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.774
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.812
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.929
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.936
ENSCJAG00000015222 Callithrix jacchus ENSCJAG00000015222 I 0.752
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.915
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.872
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 1.000
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.901
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.971
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.936
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.886
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 1.000
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.922
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.872
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.971
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 1.000
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.950
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.986
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.844
ENSETEG00000001872 Echinops telfairi ENSETEG00000001872 I 0.777
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.908
ENSETEG00000018059 Echinops telfairi ENSETEG00000018059 I 0.745
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 1.000
ENSG00000215492 Homo sapiens ENSG00000215492 I 1.000
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.786
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.907
ENSGGOG00000022797 Gorilla gorilla ENSGGOG00000022797 I 0.733
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.766
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.986
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.894
ENSGGOG00000027762 Gorilla gorilla ENSGGOG00000027762 I 0.750
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.887
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.971
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.993
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.950
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.957
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.866
ENSMICG00000012083 Microcebus murinus ENSMICG00000012083 I 0.760
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 1.000
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.908
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.986
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.872
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.772
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.779
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.915
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.814
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.814
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.879
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.822
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.922
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.863
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.873
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.971
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.986
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 1.000
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.964
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.986
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.993
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.929
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.971
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.986
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.993
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 1.000
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.986
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.767
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.979
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.793
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.993
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.893
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.871
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.793
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.957
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 1.000
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.943
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.908
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.901
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.944
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.964
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.907
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 1.000
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.894
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 1.000
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.922
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.950
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 1.000
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 1.000
HNRNPA1 Homo sapiens ENSG00000135486 D 1.000
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.907
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 1.000
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 1.000
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.929
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.979
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 1.000
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.872
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.872
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.879
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.872
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.872
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.872
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.879
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.872
HNRNPA3 Homo sapiens ENSG00000170144 I 0.872
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.872
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.872
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.872
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.872
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.872
LOC100054206 Equus caballus ENSECAG00000006699 I 0.908
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.872
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.993
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.929
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.979
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.971
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.872
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.979
LOC710473 Macaca mulatta ENSMMUG00000012989 I 1.000
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.993
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.993
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.979
LOC781499 Bos taurus ENSBTAG00000021580 I 0.872
LOC785445 Bos taurus ENSBTAG00000025621 I 0.943
P17130 Xenopus laevis P17130 I 0.907
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 1.000
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 1.000
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.979
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 1.000
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 1.000
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 1.000
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.872
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.880
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 1.000
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.866
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.810
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.957
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.957
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.929
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.908
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.879
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.873
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.806